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FASTA Sequence PDB Format mmCIF Format
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3J79

Cryo-em structure of the plasmodium falciparum 80s ribosome bound to the anti-protozoan drug emetine, large subunit

PDB DOI: 10.2210/pdb3j79/pdb

Classification: RIBOSOME/INHIBITOR
Organism(s): Plasmodium Falciparum

Deposited: 2014-06-02
Deposition Author(s): Bai, X.C. , Baum, J. , Brown, A. , Condron, M. , Fernandez, I.S. , Hanssen, E. , Scheres, S.H.W. , Tan, Y.H. , Wong, W.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

3j79
Literature

Cryo-em structure of the plasmodium falciparum 80s ribosome bound to the anti-protozoan drug emetine, large subunit

Bai, X.C. , Baum, J. , Brown, A. , Condron, M. , Fernandez, I.S. , Hanssen, E. , Scheres, S.H.W. , Tan, Y.H. , Wong, W.

Primary Citation of Related Structures: 3J79


Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein eL34 A 150 Plasmodium Falciparum MAQRVHYRRHNHYNTKSNKVRPVRTPGGKLTIHVVKKKAGKPKCADCKTAIQGVKALRPADNYRARRKNRTVARAYGGSICARCIRERIMRAFLFEEQKCVRQVLKEKKKQEKKVKKVKKEKKKVNAKEVKKTATDNKKAKKVADKKKGK
60S ribosomal protein eL8 J 283 Plasmodium Falciparum MAKDKKQQKKPSKKTPAPCPLSTKVTVKKEIKKEKKTGIKDNPLIFEKKKRSNIIGVGVRPKKDLSKYVKWPRYIRIQRKKKILLQRLKVPPSINQFNHTLPKSQTQDLLNFLKAYKPESKTDKKQRLLNKAKEALNKNITKDKKPLFLKYGINHITKLVENKKANLVVIANDVSPIELVLFLPALCRLKEVPYCIVKDKATLGKLVHKKTATAVCLESVKKEDQEKLDYFAKVCKENFNDNVDLRRKWGGQKMSAKSMLLKKMKDKARKIEEAKKKEISAKL
60S ribosomal protein uL13 K 202 Plasmodium Falciparum MYKKEYVIDCKGHLLGRLASLIAKELLNGQRIVAVRCEDINISGSLYRNKLKYQEFLRLRTNTNPKKGPLHLREPSKILWRCVRGMLPHKTYKGQLALKKLKVCVGMPYPYDKKKKYVLPSALRAFRLKKHRRYCRLGTLSSRVGWNYDTLVKKNEVLRKQVSKAYYKKKVNNLNEKKEIKTEALNLINPEQRQVLENFGYA
60S ribosomal protein eL13 L 215 Plasmodium Falciparum MVAHNNVLPNVHLHKWWQRHVRVNFSKNIKKKKRRLLREKRRKANGGTPIEKLHPIVHCPTQRYNFRTRLGKGFTFEELKGAGLTPRAAQTIGICYDKRRKNRSEESLTKNVERLLKYKNSLVMIPLKKNKAKKGIGGIPADADKNTIKEFRNKKPLLSIFKKEKNTKPFYETIEVSKIDKEFLAYKTLRRAKLAERRKNRRQQKKDIKFKSKDN
60S ribosomal protein uL14 M 139 Plasmodium Falciparum MKRGRAGTLKNKMRITLSLPVGALINCCDNSGGKNLYIIAVQGFGSCLNRLPAASLGDMVLATVKKGKPDLRKKVLNAIICRQSKAWRRHEGYYIYFEDNAGVIVNPKGEMKGSAITGPVARECAELWPKLSSAASAIV
60S ribosomal protein eL14 N 165 Plasmodium Falciparum MPRVELTEEEKLYISKKNLLFKRFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFITGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMIIKKKRDEATDFERFQVYFAKRELKKKMTTIKNKKNGENKKVKKNVQKVKA
60S ribosomal protein uL15 O 148 Plasmodium Falciparum MATRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGLHHMRINFDKYHPGYFGKVGMRHLNLLKNRTYCPTINVDKLWGLLPEEKKKEFSENKDIAPVIDVTRKGYFKVLGNGKLKHNQPIVVKARYFSSVAEKKIKAVGGQCILVA
60S ribosomal protein eL15 P 205 Plasmodium Falciparum MGAYKYIQEIWKKKQSDAMHFLLRVRTWEYRQLPVVHRVSKPSRPDKARRLGYKAIQGFVIYRVRVRRGDRKKRVKKGIVHGKPKHQGVHKQKSTRNLKSVAEGKVGKSICGNLRVLNSYWVGQDAVYKYYEVILVDPNHNAVRNNPKINWICNPVHKHRELRGLTSAGKKYRGLRVKGHLSAKSRPSIRANWKRRQLIKLRKCR
60S ribosomal protein uL16 Q 219 Plasmodium Falciparum MGRRPARCYRYCKNKPYPKSRYCRGVPDPKIRIYDMGRKKADVNEFSGVVHLVSYEYEQISSEALEAARISANKYMITNCGKDNFHLRVRIHPFHVLRINKMLSCAGADRLQTGMRGAFGKPNGVVARVDIGQVLLSIRTKENFVSKACEALRRAKYKFPGRQKVFVSNKWGFTPFSKDEYQQYKKKGRIISDGVSCKFIREKGPLDKIYKDINTVLES
60S ribosomal protein uL18 R 294 Plasmodium Falciparum MAYVKVVKNKAYFKRYQVKYRRRREGKTDYRARKALILQDKNKYNAQKLRFVVRKTNSQVICQIACAHIEGDKILAEAKSKELIRYGIPVGLKNYAAAYATGLLCARRFLKSLNLDTQFLGVEKVTGEIENNEDKEDEEGRKPIKAFLDVGITRTTTGNRVFAALKGACDGGLNIPHGNNRFPGSKNEFNPEQLRKNILGIHVAEYMKTLQEEDNDKYKTHFNDYLKNNIGADDIEQMYLNAHEKIRQNPEKESKDTKNVKKFVSKHEKPKKLNAKLRKKRVKEKLALYVEKLQ
60S ribosomal protein eL18 S 187 Plasmodium Falciparum MGIALKNVGRIKKHGRKHLVSKNPYLRLLVKLYNFLARRTNANFNKIIAKRLIMPKRYRPPLSLSKLQYHMANHPNDIAVVVGSITDDKRLFSLKQLKVCALRFTETARKRIEDAGGECLTFDQLALKYPTGKKCVLLRGPTKARTAEKHFGKAPGKPKSKARPYVRSKGRKFEKARGRRKSRAYKK
60S ribosomal protein eL36 B 112 Plasmodium Falciparum MGRKSTIKPATGIAVGFNSGHVVTKRNLKLHKKKKPFSKRKELIKDVVREITGFSPYEKRIIELIKIGTSASTKRSLKYAKKKLGTHKRGKAKREEIQKVVILQRRKAAEKH
60S ribosomal protein eL19 T 182 Plasmodium Falciparum MSLTLQKRLAASVLKCGKNKIWMDPNEISEISLANSRFSIRKLYKEGLILKKPQKVHSRARVRLYKLAKRKGRHMGIGKRKGTKNARTNQKTLWIKRQRVLRRLLKRLRDSKKVDRHLYHSFYLKCKGNQFKNKRTLIEAIQREKNETLKKKAIADQLEAKRLKAQVLRNKRKLKKDKEVVA
60S ribosomal protein eL20 U 184 Plasmodium Falciparum MVKKIDNSLNTNIHQYHIVGRAIPTAKDKNPNVYRMCIFAKNDTNAKSRFWYFMKKINKLKKSNGELLACEQIKERFPLRVKNYGVLLRYDSRTGTHNMYKEFRDTTKEGAIAQLYSEMAGRHRARASSINIIRISEISSSLVRRPHIKQLLKRRLRFPALHLPTLQKEYRKKFASKRPSTYRM
60S ribosomal protein eL21 V 161 Plasmodium Falciparum MGGKSRGKRSGTRYKFSKKFRKHGECTANKYLEKLNYGDYVDIVCDSTQQKGMPFNYYHGKTGKIFHITKRGVGVLVNKRVKHRIEQKKVCVRIEHVRKSRCNEDFLLRKIKNAELIKEAKLKNEHINIKRKTEGPKPAAMIKVPPSKIITIEPLPFYEEY
60S ribosomal protein uL22 W 203 Plasmodium Falciparum MVKYAKKIRNLGKCAKGAGVDLRVHFKNTYEAARAIRRMKLLEAKKYLNDVIEKKRCVPFRKYNGGVGRTNQAKEFNHTQGRWPAKSCKFLLNILDNVQANAESRNLDVSKLRLIHVMVNKARPGRRRTYKAHGRINPFMSSPCHIQIIAREINKPAKKSLLSNAEKQKKLPFKVTLKKLIKLNISNQNRLKNKSVKKQQTVQ
60S ribosomal protein eL22 X 139 Plasmodium Falciparum MVAKKDSTKVSKKLKKKVVKKTKIVKGLKKQKMNKSTKGIKYVLDCTKPVKDTILDISGLEQFFKDKIKVDKKTNNLKNKVVVTSDEYKIYITVHIPFSKRYIKYLAKKYIKMHQIRDFLRVIAKGKLAYEFKYFQLNN
60S ribosomal protein uL23 Y 190 Plasmodium Falciparum MTQVEKKKKNVKNVNKHKIIHKRVIKKGNRKYTNGNTKVKYRKQVVKKTINKNVSKKKLLKENVDKDEKKKKMKISIRFKKPKTLIYARNPKCPRIVKSCHSKTLDKYGLIKYPLTSEKAMKKIEEINTLVFMCDKRANKKNIKKSVKNLFGIECDKVNVLNTLNGDKKAYVRLSGEHDALEVANKIGIL
60S ribosomal protein uL24 Z 126 Plasmodium Falciparum MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN
60S ribosomal protein eL24 0 162 Plasmodium Falciparum MSQIKTTVKTEACSFSEYRIYPGRGQKYIARDGKVYFYLSSKFASLALQKKKAAKLRWTQTWRRNNKKTKIETTQRRRYKKTIKVQKAVCGLTVEDIRNRKAYVQSIEAKNKAKFGTKEKEDKKKTKDDKKKNLVHFQQKKDFTKSKMLNMAKSKMHKMMKK
60S ribosomal protein eL27 1 146 Plasmodium Falciparum MGKLLKPGKVIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHPLKVNKSMTKKKIVKRSKVKAFIKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTGEVSKDISFLHKKLYF
60S ribosomal protein eL28 2 127 Plasmodium Falciparum MSNVSNALVWELTRKSNCFIKKNKAGKKGVFLCDPLNVNYKNTPSSSGLVKSNSTNVTLKDGKVVFSVKTSKESNVVNQHFKAKNMKNVEKLLQQHGSFEKAKNKEKLLKKYKRLSKLYETSHKKTN
60S ribosomal protein eL37 C 92 Plasmodium Falciparum MGKAGKGTGSFGKRNGKTHFLCLRCGKRSYHLQKKKCASCGYPSAKKRRFNWSVKAKRRNTTGTGRCRYIKTLRRKLKNKFTEGSTPKPKQR
60S ribosomal protein uL29 3 124 Plasmodium Falciparum MSNVKAYELRTLKKKELLDKLDELKKELSGLRISKALGNSAKNSKIHGVRKNVARVLTVYNQKRKMELRQLYKNKKFKPYNLRKKLTKNKRLQLSPKQKAAMTLRQKKKVQNFPQRKYLVVHKE
60S ribosomal protein eL29 4 67 Plasmodium Falciparum MAKSKNHTNHNQNRKAHKNGIKKPKKHKFMSRKGLDPNFFRNQKYCLKGIQKKKKELKLKAKQEKNN
60S ribosomal protein uL30 5 257 Plasmodium Falciparum MADRYENQVENELGKSMTSLRAKKVNKNKELKQAAAKKIKTLKLINKKKRNDLRQRTLRYEEEYESERKKIIELKREARKNNCFYREAEKKVVFVIRLKGVNKLPPKVRSVFRLLRLLQVHNGVFVKVNKATKEMLKIVEPYVTYGYPTLSTVRKLLYKRGYVRVGKVRRYARKKIQDNADISKHLGKYNVHGIEDMVYQLYTCGPVFKKVNNFLWAFKLKPPRKGFKAKRHAFNEPRPGDWGNREAHINELINRMI
60S ribosomal protein eL30 6 108 Plasmodium Falciparum MAKKSKKSAGDNINAKLQLVMKSGKYQFGRKSCLKALRTGKGKLVIVSSNCPSIQRSVIEYYAMLSKCGVHDYHGDNNDLGTACGKLFRISCLVITDVGDSDIIKTNE
60S ribosomal protein eL31 7 120 Plasmodium Falciparum MVKGTVKKQKKTLKPVTKFITINLSKLTHKVCYKRKAPRAIKEIRSIAGKLMHTKDVRLDVKLNKFIWSKGVRNPPKRVRVKLERKRNEDEDSKEKMYTIVEHVMVDSYKGLVNECEANE
60S ribosomal protein eL32 8 131 Plasmodium Falciparum MAVKKVGKIIKKRTKKFTRFQSNRFMRVKPAWRKPRGIDCRVRRRYKGTNLMPSIGYGSNKKTKFLLPNNKYKYVVKNVKEMEPLIMNHTKYCVQIAHNVSSKKRKQIIERAKQMNVSVINAKARLQKTEE
60S ribosomal protein eL33 9 140 Plasmodium Falciparum MENVKVKKEQTEVSQKKKVVKKVLKKNKKTSNKKLQAVRLYEKGVILGYKRSQRNQDPNFTLISIKNVNTKKHAQFYVGKRVAYVYRTTKHHDGVKIKCIWGKVCRTHGNSGVIRAKFKTHIPPKAFGDRVRILMYPSNI
60S ribosomal protein eL38 D 87 Plasmodium Falciparum MPKQITDIRKFLKISRKPDTTAVIIMKKKSKTKKNTVITKLKLRTKKYLYTMVFADRKKAERIENSLLPSLKRIYYPQKKVGKTVKK
60S ribosomal protein uL3 E 386 Plasmodium Falciparum MSHRKFERPRHGSLGFLPRKRCKRLRGKIRSFPKDDKEKPPHFTAFMGYKAGMTHIVREVDKPGSKLHKKEIVEACTIIECAPMVVVGIVGYRETPKGLRILSTVWANHVSDEFRRRYYKNWYKSEKKAFTKSLNVPEATKNCLLKRIEKYCTVLRAICHTQPSKTPLRMKKAHIMEVQINGGSMKEKLEFVKEMLEKNLPVSTVFNPNEMIDVISVTKGHGTKGVVSRYGVKRLPRKTHRGLRKVACIGAWHPARVQFQIPRHGQKGYFHRTERNKKIYRIGLKTDKNSASTDADITEKKITPMGGFPHYGVVNEDFLLLKGCVAGTKKRPITLRKNIVPQVSRDALAQVSLKFIDTSSKIGHGRFQTSEEKVKYYGPLKKDLKA
60S ribosomal protein uL4 F 411 Plasmodium Falciparum MATIRPVANVYSTNGKNVVGEVEIPVVFQTPIRNDLIQSVYTNMSKNRRHPYAVKLGAGYETSAESWGTGRAVARIPRVPGGGTHRAGQGAFGNMCRGGGMFNPTKIWRRWGRKVNLKEKRYAVCSSIAASGVTSLVLARGHRISHLKEVPLVVSNDIESLSKTKEAVNFLVSLGLKDEVNRLVKSKKIRAGKGKMRNRKYKIRNGPLIIYENDNGVKKAFRNIPGVDLCKVTKLNLLKLAPGGSIGRLCIWSESAFKKLDVIYGKIHEKKVTKKNYILPKSIVHNPDIYRIIHSDKVQASLLAKKKPCKKRLQNKNSLTNFAVRCRLNPAYKLLRSLAVLRMRKSILEKSKNKKEKRVQKQIQKKELQKINHDYYKGVAKAVKKKKKREEKKAKSKKTANQAVINVAAEE
60S ribosomal protein uL5 G 173 Plasmodium Falciparum MENKEQNVMREIKVNKLVLNICVGESGDRLTRAARVLEQLTEQKPIFGKCRFTIRSFGVRRNEKISCFVTVRGKKALEILEKGLKVKEYELRRKNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVHLSRSGYRVTRRTRRRSKISKTHKVTKEDAMKWFQTKFDGILLK
60S ribosomal protein uL6 H 190 Plasmodium Falciparum MKTIVSTQKVLIPEGVKVAINARKVTVSGKYGTLRRSFRHLPIDIRLNKLKKYIKVVMWFGVPDSLACIRTVCTHLKNMFTGVTKKFLYKMRLVHAHFPINSNIVDNNTRIEIRNYLGEKSVRFVKALPGVVIEKSPNVKDEIYVSGADIENVSLTAALIHQSVLCRNKDIRKFLDGIYVSEVTTVEKDE
60S ribosomal protein eL6 I 221 Plasmodium Falciparum MTNTSNELKHYNVKGKKKVLVPVNAKKTINKKYFGRKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKKQKKLLKNKNEALFMNNVIDKIKEIRKEDPKVQKLEGIQKDIGSLLKPEILKNKVFAHYLKSKFTLRNDMVLHKMKF
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2014-06-02
Deposition Author(s): Bai, X.C. , Baum, J. , Brown, A. , Condron, M. , Fernandez, I.S. , Hanssen, E. , Scheres, S.H.W. , Tan, Y.H. , Wong, W.