3J6U
Cryo-em structure of dengue virus serotype 3 in complex with human antibody 5j7 fab
PDB DOI: 10.2210/pdb3j6u/pdb
Classification: VIRUS/IMMUNE SYSTEM Organism(s): Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica
Deposited: 2014-03-26 Deposition Author(s): Crowe Jr., J.E. , De Alwis, R. , De Silva, A.M. , Fibriansah, G. , Kostyuchenko, V.A. , Kukkaro, P. , Lok, S.-M. , Ng, T.-S. , Smith, S.A. , Tan, J.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 9.0 Å
Cryo-em structure of dengue virus serotype 3 in complex with human antibody 5j7 fab
Crowe Jr., J.E. , De Alwis, R. , De Silva, A.M. , Fibriansah, G. , Kostyuchenko, V.A. , Kukkaro, P. , Lok, S.-M. , Ng, T.-S. , Smith, S.A. , Tan, J.L.
Primary Citation of Related Structures: 3J6U
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| envelope protein | A | 493 | Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica | MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLCIEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQCLEPIEGKVVQYENLKYTVIITVHTGDQHQVGNETQGVTAEITPQASTTEAILPEYGTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLVTFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGTSIFAGHLKCRLKMDKLELKGMSYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAILGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTSMSFSCIAIGIITLYLGAVVQA |
| envelope protein | C | 493 | Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica | MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLCIEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQCLEPIEGKVVQYENLKYTVIITVHTGDQHQVGNETQGVTAEITPQASTTEAILPEYGTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLVTFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGTSIFAGHLKCRLKMDKLELKGMSYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAILGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTSMSFSCIAIGIITLYLGAVVQA |
| envelope protein | E | 493 | Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica | MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLCIEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQCLEPIEGKVVQYENLKYTVIITVHTGDQHQVGNETQGVTAEITPQASTTEAILPEYGTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLVTFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGTSIFAGHLKCRLKMDKLELKGMSYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAILGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTSMSFSCIAIGIITLYLGAVVQA |
| membrane protein | B | 75 | Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica | SVALAPHVGMGLDTRTQTWMSAEGAWRQVEKVETWALRHPGFTILALFLAHYIGTSLTQKVVIFILLMLVTPSMT |
| membrane protein | D | 75 | Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica | SVALAPHVGMGLDTRTQTWMSAEGAWRQVEKVETWALRHPGFTILALFLAHYIGTSLTQKVVIFILLMLVTPSMT |
| membrane protein | F | 75 | Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica | SVALAPHVGMGLDTRTQTWMSAEGAWRQVEKVETWALRHPGFTILALFLAHYIGTSLTQKVVIFILLMLVTPSMT |
| Fab 5J7 heavy chain | H | 135 | Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica | WVPGSWAQVQLVQSGAELRKPGSSVKVSCRASGGTFSSYTFNWVRQAPGQGLEWMGGFIPVFNTTNYAQTFQGRVTIAADKSTSTAYMELRSLRSEDTAIYYCARDKELLFSRAFDIWGQGTMVTVSSAGTKGPS |
| Fab 5J7 light chain | L | 118 | Listeria Seeligeri Serovar 1/2B Str. Slcc3954 , Salmonella Enterica | WVPGVHSDIQMTQSPSSLSASVGDRVTITCRASQSISRYLNWYQREPGKAPKLLIYGASSLQRGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSQYIPYTFGQGTKVDIKRTVA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2014-03-26 Deposition Author(s): Crowe Jr., J.E. , De Alwis, R. , De Silva, A.M. , Fibriansah, G. , Kostyuchenko, V.A. , Kukkaro, P. , Lok, S.-M. , Ng, T.-S. , Smith, S.A. , Tan, J.L.