3J46
Structure of the secy protein translocation channel in action
PDB DOI: 10.2210/pdb3j46/pdb
Classification: RIBOSOME/PROTEIN TRANSPORT Organism(s): Escherichia Coli
Deposited: 2013-06-18 Deposition Author(s): Akey, C.W. , Gumbart, J.C. , Li, W. , Ludtke, S.J. , Menetret, J.F. , Park, E. , Rapoport, T.A. , Whynot, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 10.1 Å
Structure of the secy protein translocation channel in action
Akey, C.W. , Gumbart, J.C. , Li, W. , Ludtke, S.J. , Menetret, J.F. , Park, E. , Rapoport, T.A. , Whynot, A.
Primary Citation of Related Structures: 3J46
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L29P | Y | 63 | Escherichia Coli | MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAGA |
| Preprotein translocase subunit SecE | E | 56 | Escherichia Coli | XEARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFITGLRFX |
| Protein-export membrane protein SecG | G | 67 | Escherichia Coli | XFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFGSSGSGNFMTRMTALLATLFFIISLVLGNIX |
| NC100 | N | 101 | Escherichia Coli | XAKKIWLALAGLVLAFSASCAQYEDGSSGELERQHTFALHQRSISGDGDSPHSYHSLPEGVKMTKYLQEQKLAVAAVAAQADLELFSTPVWISQAQGIRAG |
| 50S ribosomal protein L1 | 5 | 234 | Escherichia Coli | MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGLSASVN |
| 50S ribosomal protein L23P | T | 100 | Escherichia Coli | MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE |
| 50S ribosomal protein L24P | U | 103 | Escherichia Coli | AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S ribosomal RNA | 1 | 63 | NA | AAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUU |
| 23S ribosomal RNA | 2 | 36 | NA | AAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGA |
| 23S ribosomal RNA | 3 | 44 | NA | AGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCC |
| 23S ribosomal RNA | 4 | 109 | NA | CUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAA |
| P-tRNA | p | 76 | NA | GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA |
| A-tRNA | a | 76 | NA | GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2013-06-18 Deposition Author(s): Akey, C.W. , Gumbart, J.C. , Li, W. , Ludtke, S.J. , Menetret, J.F. , Park, E. , Rapoport, T.A. , Whynot, A.