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3J40

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-em and modeling

PDB DOI: 10.2210/pdb3j40/pdb

Classification: VIRUS
Organism(s): Salmonella Phage Epsilon15

Deposited: 2013-05-30
Deposition Author(s): Adams, P.D. , Afonine, P.V. , Baker, M.L. , Chiu, W. , Haase-Pettingell, C. , Hryc, C.F. , Jakana, J. , Jiang, W. , King, J.A. , Wu, W. , Zhang, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.5 Å

3j40
Literature

Validated near-atomic resolution structure of bacteriophage epsilon15 derived from cryo-em and modeling

Adams, P.D. , Afonine, P.V. , Baker, M.L. , Chiu, W. , Haase-Pettingell, C. , Hryc, C.F. , Jakana, J. , Jiang, W. , King, J.A. , Wu, W. , Zhang, Q.

Primary Citation of Related Structures: 3J40


Proteins
Molecule Chains Sequence Length Organism Sequence
gp10 N 111 Salmonella Phage Epsilon15 MKTVNMKTGTDSFVGEDGKPETKDQYPWGLRITLDNESLQRLGLNAKSLPAVGDSVSVMAMANVCSVSTRTTDHGEDNYVELQITDIGLAPQKRDDAKELKDAFYPDGEDD
gp10 M 111 Salmonella Phage Epsilon15 MKTVNMKTGTDSFVGEDGKPETKDQYPWGLRITLDNESLQRLGLNAKSLPAVGDSVSVMAMANVCSVSTRTTDHGEDNYVELQITDIGLAPQKRDDAKELKDAFYPDGEDD
gp10 H 111 Salmonella Phage Epsilon15 MKTVNMKTGTDSFVGEDGKPETKDQYPWGLRITLDNESLQRLGLNAKSLPAVGDSVSVMAMANVCSVSTRTTDHGEDNYVELQITDIGLAPQKRDDAKELKDAFYPDGEDD
gp10 K 111 Salmonella Phage Epsilon15 MKTVNMKTGTDSFVGEDGKPETKDQYPWGLRITLDNESLQRLGLNAKSLPAVGDSVSVMAMANVCSVSTRTTDHGEDNYVELQITDIGLAPQKRDDAKELKDAFYPDGEDD
gp10 I 111 Salmonella Phage Epsilon15 MKTVNMKTGTDSFVGEDGKPETKDQYPWGLRITLDNESLQRLGLNAKSLPAVGDSVSVMAMANVCSVSTRTTDHGEDNYVELQITDIGLAPQKRDDAKELKDAFYPDGEDD
gp10 J 111 Salmonella Phage Epsilon15 MKTVNMKTGTDSFVGEDGKPETKDQYPWGLRITLDNESLQRLGLNAKSLPAVGDSVSVMAMANVCSVSTRTTDHGEDNYVELQITDIGLAPQKRDDAKELKDAFYPDGEDD
gp10 L 111 Salmonella Phage Epsilon15 MKTVNMKTGTDSFVGEDGKPETKDQYPWGLRITLDNESLQRLGLNAKSLPAVGDSVSVMAMANVCSVSTRTTDHGEDNYVELQITDIGLAPQKRDDAKELKDAFYPDGEDD
gp7 A 335 Salmonella Phage Epsilon15 MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA
gp7 F 335 Salmonella Phage Epsilon15 MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA
gp7 B 335 Salmonella Phage Epsilon15 MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA
gp7 G 335 Salmonella Phage Epsilon15 MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA
gp7 D 335 Salmonella Phage Epsilon15 MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA
gp7 C 335 Salmonella Phage Epsilon15 MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA
gp7 E 335 Salmonella Phage Epsilon15 MALIGQTLPSLLDIYNRTDKNGRIARIVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTTGMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAPRFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMVAGFQHEDLGDDLVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAYYARDVAMLGDGKEVIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRVDAILNTESAVTA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2013-05-30
Deposition Author(s): Adams, P.D. , Afonine, P.V. , Baker, M.L. , Chiu, W. , Haase-Pettingell, C. , Hryc, C.F. , Jakana, J. , Jiang, W. , King, J.A. , Wu, W. , Zhang, Q.