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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

3J1B

Cryo-em structure of 8-fold symmetric ratcpn-alpha in apo state

PDB DOI: 10.2210/pdb3j1b/pdb

Classification: CHAPERONE
Organism(s): Acidianus Tengchongensis

Deposited: 2012-02-06
Deposition Author(s): Chan, K.Y. , Dong, Z.Y. , Gao, B. , Hu, Z.J. , Ji, G. , Liu, Y.X. , Schulten, K. , Sun, F. , Wang, L. , Wang, X. , Zhang, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.9 Å

3j1b
Literature

Cryo-em structure of 8-fold symmetric ratcpn-alpha in apo state

Chan, K.Y. , Dong, Z.Y. , Gao, B. , Hu, Z.J. , Ji, G. , Liu, Y.X. , Schulten, K. , Sun, F. , Wang, L. , Wang, X. , Zhang, K.

Primary Citation of Related Structures: 3J1B


Proteins
Molecule Chains Sequence Length Organism Sequence
Chaperonin alpha subunit A 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit B 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit C 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit D 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit E 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit F 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit G 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit H 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit I 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit J 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit K 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit L 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit M 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit N 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit O 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Chaperonin alpha subunit P 563 Acidianus Tengchongensis MSSGVPVLLFKEGTSRNSGRDALKNNILAARTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDSEVGDGTTSAVVLAGLFLEKAESLVDQNIHPTIIIEGFKKAFNKSLELLPQLATKVDVSDLNSATARDALKKIVYTTMSSKFMAEGEELNKIMDIVIDAVTTVAEPLPDGGYNVSLDLIKIDKKKGGTIEDSQLIRGIVLDKEVVHAGMPRRVEKAKIAVLDASLEVEKPEISAKISITSPDQIKAFLDEEAKYLKDMVDKLASIGANVVICQKGIDDIAQHFLAKRGILAVRRVKRSDIEKLEKALGARIISSIKDATPEDLGYAELVEERKVGNDKMVFIEGAKNPKAVNILLRGSNDMALDEAERSINDALYSLRNILMEPYIVPGGGAIELELSARLREYARSVGGKEQLAIEAYADALEEIPMILAETAGLEPISALMDLRARHAKGLTNCGVDVINGKIIDDIYSINVVEPIRVTRQVLKSATEAATSIMKIDDLIAASQLKSSGKGAGAGAGGEGAEGGGAPSMEGLS
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2012-02-06
Deposition Author(s): Chan, K.Y. , Dong, Z.Y. , Gao, B. , Hu, Z.J. , Ji, G. , Liu, Y.X. , Schulten, K. , Sun, F. , Wang, L. , Wang, X. , Zhang, K.