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FASTA Sequence PDB Format mmCIF Format
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3IYK

Bluetongue virus structure reveals a sialic acid binding domain, amphipathic helices and a central coiled coil in the outer capsid proteins

PDB DOI: 10.2210/pdb3iyk/pdb

Classification: VIRUS
Organism(s): Bluetongue Virus

Deposited: 2010-01-25
Deposition Author(s): Bhattacharya, B. , Boyce, M. , Roy, P. , Schein, S. , Zhang, X. , Zhang, X. , Zhou, Z.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 7.0 Å

3iyk
Literature

Bluetongue virus structure reveals a sialic acid binding domain, amphipathic helices and a central coiled coil in the outer capsid proteins

Bhattacharya, B. , Boyce, M. , Roy, P. , Schein, S. , Zhang, X. , Zhang, X. , Zhou, Z.H.

Primary Citation of Related Structures: 3IYK


Proteins
Molecule Chains Sequence Length Organism Sequence
VP5 A 526 Bluetongue Virus MGKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIPRAQQPQIHVYSAPWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRIVYDDELQMHILRGPIHFQRRAILGALKFGCKVLGDRLDVPLFLRNA
VP5 B 526 Bluetongue Virus MGKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIPRAQQPQIHVYSAPWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRIVYDDELQMHILRGPIHFQRRAILGALKFGCKVLGDRLDVPLFLRNA
VP5 C 526 Bluetongue Virus MGKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIPRAQQPQIHVYSAPWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRIVYDDELQMHILRGPIHFQRRAILGALKFGCKVLGDRLDVPLFLRNA
VP5 D 526 Bluetongue Virus MGKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIPRAQQPQIHVYSAPWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRIVYDDELQMHILRGPIHFQRRAILGALKFGCKVLGDRLDVPLFLRNA
VP5 E 526 Bluetongue Virus MGKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIPRAQQPQIHVYSAPWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRIVYDDELQMHILRGPIHFQRRAILGALKFGCKVLGDRLDVPLFLRNA
VP5 F 526 Bluetongue Virus MGKVIRSLNRFGKKVGNALTSNTAKKIYSTIGKAAERFAESEIGSAAIDGLVQGSVHSIITGESYGESVKQAVLLNVLGSGEEIPDPLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGMQEEAIQEIAGMTADVLEAASEEVPLIGAGMATAVATGRAIEGAYKLKKVINALSGIDLTHLRTPKIEPSVVSTILEYRAKEIPDNALAVSVLSKNRAIQENHKELMHIKNEILPRFKKAMDEEKEICGIEDKVIHPKVMMKFKIPRAQQPQIHVYSAPWDSDDVFFFHCISHHHANESFFLGFDLSIDLVHYEDLTAHWHALGAAQTAAGRTLTEAYREFLNLAISNAFGTQMHTRRLVRSKTVHPIYLGSLHYDISFSDLRGNAQRIVYDDELQMHILRGPIHFQRRAILGALKFGCKVLGDRLDVPLFLRNA
VP2 G 600 Bluetongue Virus MDELGIPVYKRGFPEHLLRGYEFIIDVGTKIESVGGRHDVTKIPEMNAYDIKQESIRTALWYNPIRNDGFVLPRVLDITLRGYDERRAVVESTRHKSFHTNDQWVQWMMKDSMDAQPLKVGLDDQSRNVAHSLHNCVVKIDSKKADTMSYHVEPIEDASKGCLHTRTMMWNHLVRIETFHAAQEVAYTLKPTYDIVVHAERRDRSQPFRPGDQTLINFGRGQKVAMNHNSYDKMVEGLTHLVIRGKTPEVIRDDIASLDEICNRWIQSRHDPGEIKAYELCKILSTIGRKVLDREKEPEDEANLSIRFQEAIDNKFRQHDPERLKIFEHRNQRRDEDRFYILLMIAASDTFNTRVWWSNPYPCLRGTLIASETKLGDVYSMMRSWYDWSVRPTYTPYEKTREQEKYIYGRVNLFDFVAEPGIKIVHWEYRLNHSTREITYAQGNPCDLYPEDDDVIVTKFDDVAYGQMINEMINGGWNQEQFKMHKILKSEGNVLTIDFEKDAKLTTNEGVTMPEYFNKWIIAPMFNAKLRIKHEEIAQRQSDDPMVKRTLSPITADPIELQRLTLARFYDIRPALRGQALSRQQAQSTYDEEISKQRDY
VP2 I 600 Bluetongue Virus MDELGIPVYKRGFPEHLLRGYEFIIDVGTKIESVGGRHDVTKIPEMNAYDIKQESIRTALWYNPIRNDGFVLPRVLDITLRGYDERRAVVESTRHKSFHTNDQWVQWMMKDSMDAQPLKVGLDDQSRNVAHSLHNCVVKIDSKKADTMSYHVEPIEDASKGCLHTRTMMWNHLVRIETFHAAQEVAYTLKPTYDIVVHAERRDRSQPFRPGDQTLINFGRGQKVAMNHNSYDKMVEGLTHLVIRGKTPEVIRDDIASLDEICNRWIQSRHDPGEIKAYELCKILSTIGRKVLDREKEPEDEANLSIRFQEAIDNKFRQHDPERLKIFEHRNQRRDEDRFYILLMIAASDTFNTRVWWSNPYPCLRGTLIASETKLGDVYSMMRSWYDWSVRPTYTPYEKTREQEKYIYGRVNLFDFVAEPGIKIVHWEYRLNHSTREITYAQGNPCDLYPEDDDVIVTKFDDVAYGQMINEMINGGWNQEQFKMHKILKSEGNVLTIDFEKDAKLTTNEGVTMPEYFNKWIIAPMFNAKLRIKHEEIAQRQSDDPMVKRTLSPITADPIELQRLTLARFYDIRPALRGQALSRQQAQSTYDEEISKQRDY
VP2 K 600 Bluetongue Virus MDELGIPVYKRGFPEHLLRGYEFIIDVGTKIESVGGRHDVTKIPEMNAYDIKQESIRTALWYNPIRNDGFVLPRVLDITLRGYDERRAVVESTRHKSFHTNDQWVQWMMKDSMDAQPLKVGLDDQSRNVAHSLHNCVVKIDSKKADTMSYHVEPIEDASKGCLHTRTMMWNHLVRIETFHAAQEVAYTLKPTYDIVVHAERRDRSQPFRPGDQTLINFGRGQKVAMNHNSYDKMVEGLTHLVIRGKTPEVIRDDIASLDEICNRWIQSRHDPGEIKAYELCKILSTIGRKVLDREKEPEDEANLSIRFQEAIDNKFRQHDPERLKIFEHRNQRRDEDRFYILLMIAASDTFNTRVWWSNPYPCLRGTLIASETKLGDVYSMMRSWYDWSVRPTYTPYEKTREQEKYIYGRVNLFDFVAEPGIKIVHWEYRLNHSTREITYAQGNPCDLYPEDDDVIVTKFDDVAYGQMINEMINGGWNQEQFKMHKILKSEGNVLTIDFEKDAKLTTNEGVTMPEYFNKWIIAPMFNAKLRIKHEEIAQRQSDDPMVKRTLSPITADPIELQRLTLARFYDIRPALRGQALSRQQAQSTYDEEISKQRDY
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2010-01-25
Deposition Author(s): Bhattacharya, B. , Boyce, M. , Roy, P. , Schein, S. , Zhang, X. , Zhang, X. , Zhou, Z.H.