3IXX
The pseudo-atomic structure of west nile immature virus in complex with fab fragments of the anti-fusion loop antibody e53
PDB DOI: 10.2210/pdb3ixx/pdb
Classification: VIRUS Organism(s): Mus Musculus , West Nile Virus
Deposited: 2009-02-26 Deposition Author(s): Cherrier, M.V. , Chipman, P.R. , Diamond, M.S. , Fremont, D.H. , Holdaway, H.A. , Kaufmann, B. , Kostyuchenko, V.A. , Kuhn, R.J. , Lok, S.M. , Nelson, C.A. , Nybakken, G.E. , Rossmann, M.G. , Warren, J.T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 15.0 Å
The pseudo-atomic structure of west nile immature virus in complex with fab fragments of the anti-fusion loop antibody e53
Cherrier, M.V. , Chipman, P.R. , Diamond, M.S. , Fremont, D.H. , Holdaway, H.A. , Kaufmann, B. , Kostyuchenko, V.A. , Kuhn, R.J. , Lok, S.M. , Nelson, C.A. , Nybakken, G.E. , Rossmann, M.G. , Warren, J.T.
Primary Citation of Related Structures: 3IXX
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Envelope protein E | A | 400 | Mus Musculus , West Nile Virus | FNCLGMSNRDFLEGVSGATWVDLVLEGDSCVTIMSKDKPTIDVKMMNMEAANLAEVRSYCYLATVSDLSTKAACPTMGEAHNDKRADPAFVCRQGVVDRGWGNGCGLFGKGSIDTCAKFACSTKAIGRTILKENIKYEVAIFVHGPTTVESHGNYSTQVGATQAGRFSITPAAPSYTLKLGEYGEVTVDCEPRSGIDTNAYYVMTVGTKTFLVHREWFMDLNLPWSSAGSTVWRNRETLMEFEEPHATKQSVIALGSQEGALHQALAGAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISSVASLNDLTPVGRLVTVNPFVSVATANAKVLIELEPPFGDSYIVVGRGEQQINHHWHKS |
| Envelope protein E | B | 400 | Mus Musculus , West Nile Virus | FNCLGMSNRDFLEGVSGATWVDLVLEGDSCVTIMSKDKPTIDVKMMNMEAANLAEVRSYCYLATVSDLSTKAACPTMGEAHNDKRADPAFVCRQGVVDRGWGNGCGLFGKGSIDTCAKFACSTKAIGRTILKENIKYEVAIFVHGPTTVESHGNYSTQVGATQAGRFSITPAAPSYTLKLGEYGEVTVDCEPRSGIDTNAYYVMTVGTKTFLVHREWFMDLNLPWSSAGSTVWRNRETLMEFEEPHATKQSVIALGSQEGALHQALAGAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISSVASLNDLTPVGRLVTVNPFVSVATANAKVLIELEPPFGDSYIVVGRGEQQINHHWHKS |
| Envelope protein E | C | 400 | Mus Musculus , West Nile Virus | FNCLGMSNRDFLEGVSGATWVDLVLEGDSCVTIMSKDKPTIDVKMMNMEAANLAEVRSYCYLATVSDLSTKAACPTMGEAHNDKRADPAFVCRQGVVDRGWGNGCGLFGKGSIDTCAKFACSTKAIGRTILKENIKYEVAIFVHGPTTVESHGNYSTQVGATQAGRFSITPAAPSYTLKLGEYGEVTVDCEPRSGIDTNAYYVMTVGTKTFLVHREWFMDLNLPWSSAGSTVWRNRETLMEFEEPHATKQSVIALGSQEGALHQALAGAIPVEFSSNTVKLTSGHLKCRVKMEKLQLKGTTYGVCSKAFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISSVASLNDLTPVGRLVTVNPFVSVATANAKVLIELEPPFGDSYIVVGRGEQQINHHWHKS |
| Peptide pr | D | 80 | Mus Musculus , West Nile Virus | LSNFQGKVMMTVNATDVTDVITIPTAAGKNLCIVRAMDVGYMCDDTITYECPVLSAGNDPEDIDCWCTKSAVYVRYGRCT |
| Peptide pr | E | 80 | Mus Musculus , West Nile Virus | LSNFQGKVMMTVNATDVTDVITIPTAAGKNLCIVRAMDVGYMCDDTITYECPVLSAGNDPEDIDCWCTKSAVYVRYGRCT |
| Peptide pr | F | 80 | Mus Musculus , West Nile Virus | LSNFQGKVMMTVNATDVTDVITIPTAAGKNLCIVRAMDVGYMCDDTITYECPVLSAGNDPEDIDCWCTKSAVYVRYGRCT |
| E53 Fab Fragment (chain H) | G | 221 | Mus Musculus , West Nile Virus | EVKLVESGGGLVLPGGSLRLSCATSGFTFTDYYMTWVRQPPGKALEWLGFIGNKANDYTTEYSASVKGRFTISRDDSQSILYLQMSTLRAEDRATYYCATVYGNYPYFDVWGAGTTVAVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR |
| E53 Fab Fragment (chain H) | I | 221 | Mus Musculus , West Nile Virus | EVKLVESGGGLVLPGGSLRLSCATSGFTFTDYYMTWVRQPPGKALEWLGFIGNKANDYTTEYSASVKGRFTISRDDSQSILYLQMSTLRAEDRATYYCATVYGNYPYFDVWGAGTTVAVSSAKTTPPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR |
| E53 Fab Fragment (chain L) | H | 215 | Mus Musculus , West Nile Virus | QIVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKIWIYESSKLASGVPVRFSGSGSGTSYSLTISSMEAEDVATYYCQQWSSHPHPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
| E53 Fab Fragment (chain L) | J | 215 | Mus Musculus , West Nile Virus | QIVLTQSPAIMSASPGEKVTMTCSASSSVSYMHWYQQKSGTSPKIWIYESSKLASGVPVRFSGSGSGTSYSLTISSMEAEDVATYYCQQWSSHPHPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2009-02-26 Deposition Author(s): Cherrier, M.V. , Chipman, P.R. , Diamond, M.S. , Fremont, D.H. , Holdaway, H.A. , Kaufmann, B. , Kostyuchenko, V.A. , Kuhn, R.J. , Lok, S.M. , Nelson, C.A. , Nybakken, G.E. , Rossmann, M.G. , Warren, J.T.