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3HT3

Crystal structure of fragment dna polymerase i from bacillus stearothermophilus v713p mutant bound to g:dctp

PDB DOI: 10.2210/pdb3ht3/pdb

Classification: TRANSFERASE/DNA
Organism(s): Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2009-06-11
Deposition Author(s): Beese, L.S. , Wu, E.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.7 Å

3ht3
Literature

Crystal structure of fragment dna polymerase i from bacillus stearothermophilus v713p mutant bound to g:dctp

Beese, L.S. , Wu, E.Y.

Primary Citation of Related Structures: 3HT3


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I, large fragment A 579 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK
DNA polymerase I, large fragment D 579 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) KMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' b 9 NA CGATCACGC
5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' e 9 NA CGATCACGC
5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3' c 12 NA ACGGCGTGATCG
5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3' f 12 NA ACGGCGTGATCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-06-11
Deposition Author(s): Beese, L.S. , Wu, E.Y.