3HT3
Crystal structure of fragment dna polymerase i from bacillus stearothermophilus v713p mutant bound to g:dctp
PDB DOI: 10.2210/pdb3ht3/pdb
Classification: TRANSFERASE/DNA Organism(s): Geobacillus Stearothermophilus , Synthetic Construct
Deposited: 2009-06-11 Deposition Author(s): Beese, L.S. , Wu, E.Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.7 Å
Crystal structure of fragment dna polymerase i from bacillus stearothermophilus v713p mutant bound to g:dctp
Primary Citation of Related Structures: 3HT3
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA polymerase I, large fragment | A | 579 | Geobacillus Stearothermophilus , Synthetic Construct | KMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK |
| DNA polymerase I, large fragment | D | 579 | Geobacillus Stearothermophilus , Synthetic Construct | KMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | b | 9 | NA | CGATCACGC |
| 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | e | 9 | NA | CGATCACGC |
| 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3' | c | 12 | NA | ACGGCGTGATCG |
| 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3' | f | 12 | NA | ACGGCGTGATCG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2009-06-11 Deposition Author(s): Beese, L.S. , Wu, E.Y.