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3HP6

Crystal structure of fragment dna polymerase i from bacillus stearothermophilus f710y mutant bound to g:t mismatch

PDB DOI: 10.2210/pdb3hp6/pdb

Classification: TRANSFERASE/DNA
Organism(s): Geobacillus Stearothermophilus , Synthetic Construct

Deposited: 2009-06-03
Deposition Author(s): Beese, L.S. , Wu, E.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.81 Å

Literature

Crystal structure of fragment dna polymerase i from bacillus stearothermophilus f710y mutant bound to g:t mismatch

Beese, L.S. , Wu, E.Y.

Primary Citation of Related Structures: 3HP6


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I, large fragment A 580 Geobacillus Stearothermophilus , Synthetic Construct AKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK
DNA polymerase I, large fragment D 580 Geobacillus Stearothermophilus , Synthetic Construct AKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3' b 9 NA CGATCACGG
5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3' e 9 NA CGATCACGG
5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3' c 12 NA ACGCCGTGATCG
5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3' f 12 NA ACGCCGTGATCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-06-03
Deposition Author(s): Beese, L.S. , Wu, E.Y.