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3GJF
Rational development of high-affinity t-cell receptor-like antibodies
PDB DOI: 10.2210/pdb3gjf/pdb
Classification: IMMUNE SYSTEM Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2009-03-08 Deposition Author(s): Abken, H. , Bauer, S. , Cerundolo, V. , Fischer, E. , Held, G. , Hombach, A. , Hombach, A.A. , Jones, E.Y. , Kleber, S. , Knuth, A. , Mcmichael, A. , Renner, C. , Shenderov, E. , Stenner-Liewen, F. , Stewart-Jones, G. , Wadle, A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.9 Å
Rational development of high-affinity t-cell receptor-like antibodies
Abken, H. , Bauer, S. , Cerundolo, V. , Fischer, E. , Held, G. , Hombach, A. , Hombach, A.A. , Jones, E.Y. , Kleber, S. , Knuth, A. , Mcmichael, A. , Renner, C. , Shenderov, E. , Stenner-Liewen, F. , Stewart-Jones, G. , Wadle, A.
Primary Citation of Related Structures: 3GJF
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HLA class I histocompatibility antigen, A-2 alpha chain | A | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP |
| HLA class I histocompatibility antigen, A-2 alpha chain | D | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP |
| Beta-2-microglobulin | B | 100 | Homo Sapiens , Synthetic Construct | MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | E | 100 | Homo Sapiens , Synthetic Construct | MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| NYESO-1 peptide | C | 9 | Homo Sapiens , Synthetic Construct | SLLMWITQV |
| NYESO-1 peptide | F | 9 | Homo Sapiens , Synthetic Construct | SLLMWITQV |
| Antibody light chain | L | 212 | Homo Sapiens , Synthetic Construct | QSELTQPRSVSGSPGQSVTISCTGTSRDVGGYNYVSWYQQHPGKAPKLIIHDVIERSSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCWSFAGSYYVFGTGTDVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGNTVEKTVAPT |
| Antibody light chain | K | 212 | Homo Sapiens , Synthetic Construct | QSELTQPRSVSGSPGQSVTISCTGTSRDVGGYNYVSWYQQHPGKAPKLIIHDVIERSSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCWSFAGSYYVFGTGTDVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGNTVEKTVAPT |
| Antibody heavy chain | H | 220 | Homo Sapiens , Synthetic Construct | EVQLLESGGGLVQPGGSLRLSCAASGFTFSTYQMSWVRQAPGKGLEWVSGIVSSGGSTAYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAGELLPYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
| Antibody heavy chain | M | 220 | Homo Sapiens , Synthetic Construct | EVQLLESGGGLVQPGGSLRLSCAASGFTFSTYQMSWVRQAPGKGLEWVSGIVSSGGSTAYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAGELLPYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2009-03-08 Deposition Author(s): Abken, H. , Bauer, S. , Cerundolo, V. , Fischer, E. , Held, G. , Hombach, A. , Hombach, A.A. , Jones, E.Y. , Kleber, S. , Knuth, A. , Mcmichael, A. , Renner, C. , Shenderov, E. , Stenner-Liewen, F. , Stewart-Jones, G. , Wadle, A.