3GIJ
Dpo4 extension ternary complex with oxog(syn)-a(anti) and oxog(anti)-a(syn) pairs
PDB DOI: 10.2210/pdb3gij/pdb
Classification: TRANSFERASE/DNA Organism(s): Sulfolobus Solfataricus P2 , Synthetic Construct
Deposited: 2009-03-05 Deposition Author(s): Malinina, L. , Patel, D.J. , Rechkoblit, O.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.4 Å
Dpo4 extension ternary complex with oxog(syn)-a(anti) and oxog(anti)-a(syn) pairs
Malinina, L. , Patel, D.J. , Rechkoblit, O.
Primary Citation of Related Structures: 3GIJ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA polymerase IV | A | 341 | Sulfolobus Solfataricus P2 , Synthetic Construct | GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI |
| DNA polymerase IV | B | 341 | Sulfolobus Solfataricus P2 , Synthetic Construct | GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | d | 13 | NA | GTTGGATGGTAGA |
| 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' | h | 13 | NA | GTTGGATGGTAGA |
| 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3' | e | 18 | NA | CTAACGCTACCATCCAAC |
| 5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3' | j | 18 | NA | CTAACGCTACCATCCAAC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2009-03-05 Deposition Author(s): Malinina, L. , Patel, D.J. , Rechkoblit, O.