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3GIJ

Dpo4 extension ternary complex with oxog(syn)-a(anti) and oxog(anti)-a(syn) pairs

PDB DOI: 10.2210/pdb3gij/pdb

Classification: TRANSFERASE/DNA
Organism(s): Mycobacterium Avium Subsp. Hominissuis 3388 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2009-03-05
Deposition Author(s): Malinina, L. , Patel, D.J. , Rechkoblit, O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Literature

Dpo4 extension ternary complex with oxog(syn)-a(anti) and oxog(anti)-a(syn) pairs

Malinina, L. , Patel, D.J. , Rechkoblit, O.

Primary Citation of Related Structures: 3GIJ


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase IV A 341 Mycobacterium Avium Subsp. Hominissuis 3388 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI
DNA polymerase IV B 341 Mycobacterium Avium Subsp. Hominissuis 3388 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' d 13 NA GTTGGATGGTAGA
5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3' h 13 NA GTTGGATGGTAGA
5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3' e 18 NA CTAACGCTACCATCCAAC
5'-D(*CP*TP*AP*AP*CP*(8OG)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*C)-3' j 18 NA CTAACGCTACCATCCAAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-03-05
Deposition Author(s): Malinina, L. , Patel, D.J. , Rechkoblit, O.