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3FOF

Structural insight into the quinolone-dna cleavage complex of type iia topoisomerases

PDB DOI: 10.2210/pdb3fof/pdb

Classification: ISOMERASE/DNA
Organism(s): Streptococcus Pneumoniae , Synthetic Construct

Deposited: 2008-12-30
Deposition Author(s): Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Sawhney, R. , Sohi, M.K. , Thompson, A.W. , Veselkov, D.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4 Å

3fof
Literature

Structural insight into the quinolone-dna cleavage complex of type iia topoisomerases

Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Sawhney, R. , Sohi, M.K. , Thompson, A.W. , Veselkov, D.A.

Primary Citation of Related Structures: 3FOF


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA topoisomerase 4 subunit A A 496 Streptococcus Pneumoniae , Synthetic Construct MSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH
DNA topoisomerase 4 subunit A B 496 Streptococcus Pneumoniae , Synthetic Construct MSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH
DNA topoisomerase 4 subunit B C 268 Streptococcus Pneumoniae , Synthetic Construct MGHHHHHHHHHHSSGHIDDDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF
DNA topoisomerase 4 subunit B D 268 Streptococcus Pneumoniae , Synthetic Construct MGHHHHHHHHHHSSGHIDDDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*CP*CP*AP*AP*GP*GP*TP*CP*AP*TP*GP*AP*AP*T)-3') e 15 NA ACCAAGGTCATGAAT
DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3') f 19 NA AGTCATTCATGACCTTGGT
DNA (5'-D(P*CP*TP*GP*TP*TP*TP*TP*AP*CP*GP*TP*GP*CP*AP*T)-3') g 15 NA CTGTTTTACGTGCAT
DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3') h 19 NA GACTATGCACGTAAAACAG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2008-12-30
Deposition Author(s): Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Sawhney, R. , Sohi, M.K. , Thompson, A.W. , Veselkov, D.A.