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3FMG

Structure of rotavirus outer capsid protein vp7 trimer in complex with a neutralizing fab

PDB DOI: 10.2210/pdb3fmg/pdb

Classification: IMMUNE SYSTEM
Organism(s): Mus Musculus , Simian Rotavirus

Deposited: 2008-12-22
Deposition Author(s): Aoki, S.T. , Dormitzer, P.R. , Greenberg, H.B. , Harrison, S.C. , Settembre, E.C. , Trask, S.D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.4 Å

3fmg
Literature

Structure of rotavirus outer capsid protein vp7 trimer in complex with a neutralizing fab

Aoki, S.T. , Dormitzer, P.R. , Greenberg, H.B. , Harrison, S.C. , Settembre, E.C. , Trask, S.D.

Primary Citation of Related Structures: 3FMG


Proteins
Molecule Chains Sequence Length Organism Sequence
Fab of neutralizing antibody 4F8, light chain L 211 Mus Musculus , Simian Rotavirus DIQMTQSPASLSASVGETVTITCRPSENIYSYLAWYQQKQGKSPQLLVYKAKTLPEGVPSRFSGSGSGTHFSLKISSVQPEDFGTYYCQHHNGPPLTFGAGTKLELKRADAAPTVSIFPPSSKQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR
Fab of neutralizing antibody 4F8, heavy chain H 221 Mus Musculus , Simian Rotavirus QVQLQQSGAELMKPGALVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGSINYNEKFKGKATFTADTSSNTAYMQLNSLTSEDSAVYYCARNHGSPDFHVMDYWGQGTSITVSSAKTTAPPVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR
Glycoprotein VP7 A 276 Mus Musculus , Simian Rotavirus QNYGINLPITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSKRSRSLNSAAFYYRI
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2008-12-22
Deposition Author(s): Aoki, S.T. , Dormitzer, P.R. , Greenberg, H.B. , Harrison, S.C. , Settembre, E.C. , Trask, S.D.