3FKU
Crystal structure of influenza hemagglutinin (h5) in complex with a broadly neutralizing antibody f10
PDB DOI: 10.2210/pdb3fku/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1))
Deposited: 2008-12-17 Deposition Author(s): Aird, D. , Ali, M. , Bankston, L.A. , Cadwell, G. , Chen, L.M. , Cox, N. , Donis, R.O. , Han, T. , Hwang, W.C. , Liddington, R.C. , Marasco, W.A. , Murakami, A. , Perez, S. , Santelli, E. , Stec, B. , Sui, J. , Wei, G. , Yammanuru, A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.2 Å
Crystal structure of influenza hemagglutinin (h5) in complex with a broadly neutralizing antibody f10
Aird, D. , Ali, M. , Bankston, L.A. , Cadwell, G. , Chen, L.M. , Cox, N. , Donis, R.O. , Han, T. , Hwang, W.C. , Liddington, R.C. , Marasco, W.A. , Murakami, A. , Perez, S. , Santelli, E. , Stec, B. , Sui, J. , Wei, G. , Yammanuru, A.
Primary Citation of Related Structures: 3FKU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Hemagglutinin | A | 338 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | ADPGYLLEDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQRERRRKKR |
| Hemagglutinin | C | 338 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | ADPGYLLEDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQRERRRKKR |
| Hemagglutinin | E | 338 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | ADPGYLLEDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQRERRRKKR |
| Hemagglutinin | G | 338 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | ADPGYLLEDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQRERRRKKR |
| Hemagglutinin | I | 338 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | ADPGYLLEDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQRERRRKKR |
| Hemagglutinin | K | 338 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | ADPGYLLEDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEKKHNGKLCDLDGVKPLILRDCSVAGWLLGNPMCDEFINVPEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPKSSWSSHEASLGVSSACPYQGKSSFFRNVVWLIKKNSTYPTIKRSYNNTNQEDLLVLWGIHHPNDAAEQTKLYQNPTTYISVGTSTLNQRLVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSELEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNSPQRERRRKKR |
| Hemagglutinin HA2 chain | B | 182 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISGVRSLVPR |
| Hemagglutinin HA2 chain | D | 182 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISGVRSLVPR |
| Hemagglutinin HA2 chain | F | 182 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISGVRSLVPR |
| Hemagglutinin HA2 chain | H | 182 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISGVRSLVPR |
| Hemagglutinin HA2 chain | J | 182 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISGVRSLVPR |
| Hemagglutinin HA2 chain | L | 182 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISGVRSLVPR |
| Neutralizing antibody F10 | X | 280 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | QVQLVQSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSAAAEQKLISEEDLNGAAHHHHHH |
| Neutralizing antibody F10 | Y | 280 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | QVQLVQSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSAAAEQKLISEEDLNGAAHHHHHH |
| Neutralizing antibody F10 | Z | 280 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | QVQLVQSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSAAAEQKLISEEDLNGAAHHHHHH |
| Neutralizing antibody F10 | S | 280 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | QVQLVQSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSAAAEQKLISEEDLNGAAHHHHHH |
| Neutralizing antibody F10 | T | 280 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | QVQLVQSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSAAAEQKLISEEDLNGAAHHHHHH |
| Neutralizing antibody F10 | U | 280 | Homo Sapiens , Influenza A Virus (A/Viet Nam/1203/2004(H5N1)) | QVQLVQSGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSAAAEQKLISEEDLNGAAHHHHHH |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2008-12-17 Deposition Author(s): Aird, D. , Ali, M. , Bankston, L.A. , Cadwell, G. , Chen, L.M. , Cox, N. , Donis, R.O. , Han, T. , Hwang, W.C. , Liddington, R.C. , Marasco, W.A. , Murakami, A. , Perez, S. , Santelli, E. , Stec, B. , Sui, J. , Wei, G. , Yammanuru, A.