PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

3EZJ

Crystal structure of the n-terminal domain of the secretin gspd from etec determined with the assistance of a nanobody

PDB DOI: 10.2210/pdb3ezj/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Adineta Vaga , Pseudomonas Nitroreducens Hbp1

Deposited: 2008-10-22
Deposition Author(s): Hol, W.G. , Korotkov, K.V. , Pardon, E. , Steyaert, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.8 Å

Literature

Crystal structure of the n-terminal domain of the secretin gspd from etec determined with the assistance of a nanobody

Hol, W.G. , Korotkov, K.V. , Pardon, E. , Steyaert, J.

Primary Citation of Related Structures: 3EZJ


Proteins
Molecule Chains Sequence Length Organism Sequence
General secretion pathway protein GspD A 241 Adineta Vaga , Pseudomonas Nitroreducens Hbp1 GAMAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSE
General secretion pathway protein GspD C 241 Adineta Vaga , Pseudomonas Nitroreducens Hbp1 GAMAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSE
General secretion pathway protein GspD E 241 Adineta Vaga , Pseudomonas Nitroreducens Hbp1 GAMAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSE
General secretion pathway protein GspD G 241 Adineta Vaga , Pseudomonas Nitroreducens Hbp1 GAMAEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPATLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSE
NANOBODY NBGSPD_7 B 126 Adineta Vaga , Pseudomonas Nitroreducens Hbp1 QVQLQESGGGLVQAGGSLRLSCAASGSIFSINSMDWDRQAPGKQRELVATITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVKTWAGMTRDYWGQGTQVTVSSHHHHHH
NANOBODY NBGSPD_7 D 126 Adineta Vaga , Pseudomonas Nitroreducens Hbp1 QVQLQESGGGLVQAGGSLRLSCAASGSIFSINSMDWDRQAPGKQRELVATITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVKTWAGMTRDYWGQGTQVTVSSHHHHHH
NANOBODY NBGSPD_7 F 126 Adineta Vaga , Pseudomonas Nitroreducens Hbp1 QVQLQESGGGLVQAGGSLRLSCAASGSIFSINSMDWDRQAPGKQRELVATITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVKTWAGMTRDYWGQGTQVTVSSHHHHHH
NANOBODY NBGSPD_7 H 126 Adineta Vaga , Pseudomonas Nitroreducens Hbp1 QVQLQESGGGLVQAGGSLRLSCAASGSIFSINSMDWDRQAPGKQRELVATITSGGSTNYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNANVKTWAGMTRDYWGQGTQVTVSSHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2008-10-22
Deposition Author(s): Hol, W.G. , Korotkov, K.V. , Pardon, E. , Steyaert, J.