3EZ5
Cocrystal structure of bacillus fragment dna polymerase i with duplex dna , dctp, and zinc (closed form).
PDB DOI: 10.2210/pdb3ez5/pdb
Classification: TRANSFERASE/DNA Organism(s): Bacillus Stearothermophilus , Synthetic Construct
Deposited: 2008-10-22 Deposition Author(s): Beese, L.S. , Golosov, A.A. , Karplus, M. , Warren, J.J. , Wu, E.Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.9 Å
Cocrystal structure of bacillus fragment dna polymerase i with duplex dna , dctp, and zinc (closed form).
Beese, L.S. , Golosov, A.A. , Karplus, M. , Warren, J.J. , Wu, E.Y.
Primary Citation of Related Structures: 3EZ5
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA polymerase I | A | 580 | Bacillus Stearothermophilus , Synthetic Construct | KKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK |
| DNA polymerase I | D | 580 | Bacillus Stearothermophilus , Synthetic Construct | KKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3' | b | 9 | NA | CCTGACTCG |
| 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3' | e | 9 | NA | CCTGACTCG |
| 5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3' | c | 12 | NA | ATTCGAGTCAGG |
| 5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3' | f | 12 | NA | ATTCGAGTCAGG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2008-10-22 Deposition Author(s): Beese, L.S. , Golosov, A.A. , Karplus, M. , Warren, J.J. , Wu, E.Y.