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FASTA Sequence PDB Format mmCIF Format
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3ERC

Crystal structure of the heterodimeric vaccinia virus mrna polyadenylate polymerase with three fragments of rna and 3'-deoxy atp

PDB DOI: 10.2210/pdb3erc/pdb

Classification: Transcription, Transferase/DNA, RNA
Organism(s): Vaccinia Virus Wr , Synthetic Construct

Deposited: 2008-10-01
Deposition Author(s): Gershon, P.D. , Li, C. , Li, H. , Poulos, T.L. , Zhou, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.21 Å

Literature

Crystal structure of the heterodimeric vaccinia virus mrna polyadenylate polymerase with three fragments of rna and 3'-deoxy atp

Gershon, P.D. , Li, C. , Li, H. , Poulos, T.L. , Zhou, S.

Primary Citation of Related Structures: 3ERC


Proteins
Molecule Chains Sequence Length Organism Sequence
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase A 297 Vaccinia Virus Wr , Synthetic Construct MDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVASAAGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP
Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase B 297 Vaccinia Virus Wr , Synthetic Construct MDVVSLDKPFMYFEEIDNELDYEPESANEVAKKLPYQGQLKLLLGELFFLSKLQRHGILDGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPILNGLRDVTLVTRFVDEEYLRSIKKQLHPSKIILISDVASAAGGNEPSTADLLSNYALQNVMISILNPVASSLKWRCPFPDQWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRVTKSDAVNYEKKMYYLNKIVRNKVVVNFDYPNQEYDYFHMYFMLRTVYCNKTFPTTKAKVLFLQQSIFRFLNIP
Poly(A) polymerase catalytic subunit C 479 Vaccinia Virus Wr , Synthetic Construct MNRNPDQNTLPNITLKIIETYLGRVPSVNEYHMLKSQARNIQKITVFNKDIFVSLVKKNKKRFFSDVNTSASEIKDRILSYFSKQTQTYNIGKLFTIIELQSVLVTTYTDILGVLTIKAPNVISSKISYNVTSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQTNSRTFLIDLAFLIKFITGNNIILSKIPYLRNYMVIKDENDNHIIDSFNIRQDTMNVVPKIFIDNIYIVDPTFQLLNMIKMFSQIDRLEDLSKDPEKFNARMATMLEYVRYTHGIVFDGKRNNMPMKCIIDENNRIVTVTTKDYFSFKKCLVYLDENVLSSDILDLNADTSCDFESVTNSVYLIHDNIMYTYFSNTILLSDKGKVHEISARGLCAHILLYQMLTSGEYKQCLSDLLNSMMNRDKIPIYSHTERDKKPGRHGFINIEKDIIVF
Poly(A) polymerase catalytic subunit D 479 Vaccinia Virus Wr , Synthetic Construct MNRNPDQNTLPNITLKIIETYLGRVPSVNEYHMLKSQARNIQKITVFNKDIFVSLVKKNKKRFFSDVNTSASEIKDRILSYFSKQTQTYNIGKLFTIIELQSVLVTTYTDILGVLTIKAPNVISSKISYNVTSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQTNSRTFLIDLAFLIKFITGNNIILSKIPYLRNYMVIKDENDNHIIDSFNIRQDTMNVVPKIFIDNIYIVDPTFQLLNMIKMFSQIDRLEDLSKDPEKFNARMATMLEYVRYTHGIVFDGKRNNMPMKCIIDENNRIVTVTTKDYFSFKKCLVYLDENVLSSDILDLNADTSCDFESVTNSVYLIHDNIMYTYFSNTILLSDKGKVHEISARGLCAHILLYQMLTSGEYKQCLSDLLNSMMNRDKIPIYSHTERDKKPGRHGFINIEKDIIVF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA/DNA chimera (5'-D(CP*)R(UP*UP*)D(CP*C)-3') e 5 NA CUUCC
RNA/DNA chimera (5'-D(CP*)R(UP*UP*)D(CP*C)-3') f 5 NA CUUCC
RNA/DNA chimera (5'-D(CP*)R(UP*UP*)-D(C)-3') g 4 NA CUUC
RNA/DNA chimera (5'-D(CP*CP*)R(UP*UP*)D(C)-3') i 5 NA CCUUC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2008-10-01
Deposition Author(s): Gershon, P.D. , Li, C. , Li, H. , Poulos, T.L. , Zhou, S.