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3EQ3
Model of trna(trp)-ef-tu in the ribosomal pre-accommodated state revealed by cryo-em
PDB DOI: 10.2210/pdb3eq3/pdb
Classification: RIBOSOMAL PROTEIN/RNA Organism(s): Escherichia Coli K12
Deposited: 2008-09-30 Deposition Author(s): Agirrezabala, X. , Frank, J. , Li, W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 9.0 Å
Model of trna(trp)-ef-tu in the ribosomal pre-accommodated state revealed by cryo-em
Agirrezabala, X. , Frank, J. , Li, W.
Primary Citation of Related Structures: 3EQ3
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Elongation factor Tu | X | 393 | Escherichia Coli K12 | SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS |
| 30S ribosomal protein S12 | L | 123 | Escherichia Coli K12 | ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA |
| 50S ribosomal protein L11 | I | 141 | Escherichia Coli K12 | AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| tRNA | y | 74 | NA | CGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACC |
| Fragment h18 of the 16S rRNA | a | 9 | NA | CGCGGUAAU |
| Fragment h44 of the 16S rRNA | c | 11 | NA | GGGCGAAGUCG |
| Fragment H43-44 of the 23S rRNA | b | 48 | NA | AGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCU |
| Fragment H95 of the 23S rRNA | d | 28 | NA | UGCUCCUAGUACGAGAGGACCGGAGUGG |
| Fragment H69 of the 23S rRNA | e | 17 | NA | GCCGUAACUAUAACGGU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2008-09-30 Deposition Author(s): Agirrezabala, X. , Frank, J. , Li, W.