3E54
Archaeal intron-encoded homing endonuclease i-vdi141i complexed with dna
PDB DOI: 10.2210/pdb3e54/pdb
Classification: HYDROLASE/DNA Organism(s): Vulcanisaeta Distributa , Synthetic Construct
Deposited: 2008-08-13 Deposition Author(s): Nomura, N. , Nomura, Y. , Stoddard, B.L. , Sussman, D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.5 Å
Archaeal intron-encoded homing endonuclease i-vdi141i complexed with dna
Nomura, N. , Nomura, Y. , Stoddard, B.L. , Sussman, D.
Primary Citation of Related Structures: 3E54
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RRNA intron-encoded endonuclease | A | 169 | Vulcanisaeta Distributa , Synthetic Construct | MVHEEDFKEGYILGFIEAEGSFSVSIKFQRDVFGGVRLDPVFSITQKNREVLEAIKEHLGIGRIMEKAGQPNTYVYVVDNFNELVKLINFLNKYADFMIVKKRQFLMFREIANGLVNGEHLHINGLKRLVKLAYELTKESEKGYRKYDLNHVLSIIDKWDLGRNVSTSL |
| RRNA intron-encoded endonuclease | B | 169 | Vulcanisaeta Distributa , Synthetic Construct | MVHEEDFKEGYILGFIEAEGSFSVSIKFQRDVFGGVRLDPVFSITQKNREVLEAIKEHLGIGRIMEKAGQPNTYVYVVDNFNELVKLINFLNKYADFMIVKKRQFLMFREIANGLVNGEHLHINGLKRLVKLAYELTKESEKGYRKYDLNHVLSIIDKWDLGRNVSTSL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3') | c | 13 | NA | CTGACTCTCTTAA |
| DNA (5'-D(P*DGP*DGP*DTP*DAP*DGP*DCP*DCP*DAP*DA)-3') | d | 9 | NA | GGTAGCCAA |
| DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3') | e | 13 | NA | TTGGCTACCTTAA |
| DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3') | f | 9 | NA | GAGAGTCAG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2008-08-13 Deposition Author(s): Nomura, N. , Nomura, Y. , Stoddard, B.L. , Sussman, D.