3DXA
Crystal structure of the dm1 tcr in complex with hla-b*4405 and decamer ebv antigen
PDB DOI: 10.2210/pdb3dxa/pdb
Classification: IMMUNE SYSTEM Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2008-07-23 Deposition Author(s): Archbold, J.K. , Gras, S. , Macdonald, W.A. , Rossjohn, J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.5 Å
Crystal structure of the dm1 tcr in complex with hla-b*4405 and decamer ebv antigen
Archbold, J.K. , Gras, S. , Macdonald, W.A. , Rossjohn, J.
Primary Citation of Related Structures: 3DXA
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HLA class I histocompatibility complex HLA-B*4402 | A | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFYTAMSRPGRGEPRFITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRTALRYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQYAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQDRAYLEGLCVESLRRYLENGKETLQRADPPKTHVTHHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| HLA class I histocompatibility complex HLA-B*4402 | F | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFYTAMSRPGRGEPRFITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRTALRYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQYAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQDRAYLEGLCVESLRRYLENGKETLQRADPPKTHVTHHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| HLA class I histocompatibility complex HLA-B*4402 | K | 276 | Homo Sapiens , Synthetic Construct | GSHSMRYFYTAMSRPGRGEPRFITVGYVDDTLFVRFDSDATSPRKEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRTALRYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQYAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAARVAEQDRAYLEGLCVESLRRYLENGKETLQRADPPKTHVTHHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| Beta-2-microglobulin | B | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | G | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | L | 99 | Homo Sapiens , Synthetic Construct | IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| EBV decapeptide epitope | C | 10 | Homo Sapiens , Synthetic Construct | EENLLDFVRF |
| EBV decapeptide epitope | H | 10 | Homo Sapiens , Synthetic Construct | EENLLDFVRF |
| EBV decapeptide epitope | M | 10 | Homo Sapiens , Synthetic Construct | EENLLDFVRF |
| DM1 T cell receptor alpha chain | D | 199 | Homo Sapiens , Synthetic Construct | AKTTQPTSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVWGGYQKVTFGTGTKLQVIPIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPE |
| DM1 T cell receptor alpha chain | I | 199 | Homo Sapiens , Synthetic Construct | AKTTQPTSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVWGGYQKVTFGTGTKLQVIPIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPE |
| DM1 T cell receptor alpha chain | N | 199 | Homo Sapiens , Synthetic Construct | AKTTQPTSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVWGGYQKVTFGTGTKLQVIPIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPE |
| DM1 T cell receptor beta chain | E | 244 | Homo Sapiens , Synthetic Construct | TGVSQNPRHKITKRGQNVTFRCDPISEHNRLYWYRQTLGQGPEFLTYFQNEAQLEKSRLLSDRFSAERPKGSFSTLEIQRTEQGDSAMYLCASRYRDDSYNEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD |
| DM1 T cell receptor beta chain | J | 244 | Homo Sapiens , Synthetic Construct | TGVSQNPRHKITKRGQNVTFRCDPISEHNRLYWYRQTLGQGPEFLTYFQNEAQLEKSRLLSDRFSAERPKGSFSTLEIQRTEQGDSAMYLCASRYRDDSYNEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD |
| DM1 T cell receptor beta chain | O | 244 | Homo Sapiens , Synthetic Construct | TGVSQNPRHKITKRGQNVTFRCDPISEHNRLYWYRQTLGQGPEFLTYFQNEAQLEKSRLLSDRFSAERPKGSFSTLEIQRTEQGDSAMYLCASRYRDDSYNEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2008-07-23 Deposition Author(s): Archbold, J.K. , Gras, S. , Macdonald, W.A. , Rossjohn, J.