3DEG
Complex of elongating escherichia coli 70s ribosome and ef4(lepa)-gmppnp
PDB DOI: 10.2210/pdb3deg/pdb
Classification: RIBOSOME Organism(s): Escherichia Coli
Deposited: 2008-06-10 Deposition Author(s): Connell, S.R. , Fucini, P. , Mielke, T. , Nierhaus, K.H. , Qin, Y. , Spahn, C.M.T. , Topf, M. , Wilson, D.N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 10.9 Å
Complex of elongating escherichia coli 70s ribosome and ef4(lepa)-gmppnp
Connell, S.R. , Fucini, P. , Mielke, T. , Nierhaus, K.H. , Qin, Y. , Spahn, C.M.T. , Topf, M. , Wilson, D.N.
Primary Citation of Related Structures: 3DEG
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| A/L-tRNA | a | 76 | NA | GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA |
| P-tRNA | b | 77 | NA | CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA |
| 30S RNA helix 8 | e | 16 | NA | CUACUGGAAACGGUAG |
| 30S RNA helix 14 | f | 12 | NA | CUCCUACGGGAG |
| 50S RNA helix 42-44 | g | 70 | NA | CCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAG |
| 50S RNA helix 95 | i | 29 | NA | CUGCUCCUAGUACGAGAGGACCGGAGUGG |
| 50S RNA helix 71 | j | 18 | NA | UGUCGGGUAAGUUCCGAC |
| 50S RNA helix 92 | k | 15 | NA | AUGGCUGUUCGCCAU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S12 | D | 123 | Escherichia Coli | ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA |
| 50S ribosomal protein L11 | H | 141 | Escherichia Coli | AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED |
| GTP-binding protein lepA | C | 545 | Escherichia Coli | MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRGRELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQL |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2008-06-10 Deposition Author(s): Connell, S.R. , Fucini, P. , Mielke, T. , Nierhaus, K.H. , Qin, Y. , Spahn, C.M.T. , Topf, M. , Wilson, D.N.