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3D4V

Crystal structure of an alka host/guest complex n7methylguanine:cytosine base pair

PDB DOI: 10.2210/pdb3d4v/pdb

Classification: HYDROLASE/DNA
Organism(s): Escherichia Coli , Synthetic Construct

Deposited: 2008-05-15
Deposition Author(s): Bowman, B.R. , Lee, S. , Verdine, G.L. , Wang, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.9 Å

3d4v
Literature

Crystal structure of an alka host/guest complex n7methylguanine:cytosine base pair

Bowman, B.R. , Lee, S. , Verdine, G.L. , Wang, S.

Primary Citation of Related Structures: 3D4V


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-3-methyladenine glycosylase 2 A 282 Escherichia Coli , Synthetic Construct MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
DNA-3-methyladenine glycosylase 2 B 282 Escherichia Coli , Synthetic Construct MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
DNA-3-methyladenine glycosylase 2 C 282 Escherichia Coli , Synthetic Construct MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA
DNA-3-methyladenine glycosylase 2 D 282 Escherichia Coli , Synthetic Construct MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEGWQPDEA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*DGP*DAP*DCP*DAP*DTP*DGP*DAP*(FMG)P*DTP*DGP*DCP*DC)-3' e 12 NA GACATGAGTGCC
5'-D(*DGP*DAP*DCP*DAP*DTP*DGP*DAP*(FMG)P*DTP*DGP*DCP*DC)-3' g 12 NA GACATGAGTGCC
5'-D(*DGP*DGP*DCP*DAP*DCP*DTP*DCP*DAP*DTP*DGP*DTP*DC)-3' f 12 NA GGCACTCATGTC
5'-D(*DGP*DGP*DCP*DAP*DCP*DTP*DCP*DAP*DTP*DGP*DTP*DC)-3' h 12 NA GGCACTCATGTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2008-05-15
Deposition Author(s): Bowman, B.R. , Lee, S. , Verdine, G.L. , Wang, S.