PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

3C1C

The effect of h3 k79 dimethylation and h4 k20 trimethylation on nucleosome and chromatin structure

PDB DOI: 10.2210/pdb3c1c/pdb

Classification: Structural PROTEIN/DNA
Organism(s): Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct

Deposited: 2008-01-22
Deposition Author(s): Chodaparambil, J. , Hansen, J. , Lu, X. , Luger, K. , Shokat, K. , Simon, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.15 Å

3c1c
Literature

The effect of h3 k79 dimethylation and h4 k20 trimethylation on nucleosome and chromatin structure

Chodaparambil, J. , Hansen, J. , Lu, X. , Luger, K. , Shokat, K. , Simon, M.

Primary Citation of Related Structures: 3C1C


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3-like A 135 Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H3-like E 135 Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 102 Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 102 Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 129 Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSTKSK
Histone H2A type 1 G 129 Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSTKSK
Histone 2, H2bf D 125 Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct PDPAKSAPAAKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone 2, H2bf H 125 Xenopus (Silurana) Tropicalis , Xenopus Laevis , Synthetic Construct PDPAKSAPAAKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Palindromic 146bp Human Alpha satellite DNA i 146 NA ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCGGAATTCCGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT
Palindromic 146bp Human Alpha satellite DNA j 146 NA ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCGGAATTCCGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2008-01-22
Deposition Author(s): Chodaparambil, J. , Hansen, J. , Lu, X. , Luger, K. , Shokat, K. , Simon, M.