3A4K
Crystal structural analysis of hindiii restriction endonuclease in complex with cognate dna and divalent cations at 2.17 angstrom resolution
PDB DOI: 10.2210/pdb3a4k/pdb
Classification: HYDROLASE/DNA Organism(s): Haemophilus Influenzae , Synthetic Construct
Deposited: 2009-07-09 Deposition Author(s): Sato, C. , Takasaki, Y. , Tanaka, I. , Watanabe, N.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.17 Å
Crystal structural analysis of hindiii restriction endonuclease in complex with cognate dna and divalent cations at 2.17 angstrom resolution
Sato, C. , Takasaki, Y. , Tanaka, I. , Watanabe, N.
Primary Citation of Related Structures: 3A4K
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Type-2 restriction enzyme HindIII | A | 301 | Haemophilus Influenzae , Synthetic Construct | HMKKSALEKLLSLIENLTNQEFKQATNSLISFIYKLNRNEVIELVRSIGILPEAIKPSSTQEKLFSKAGDIVLAKAFQLLNLNSKPLEQRGNAGDVIALSKEFNYGLVADAKSFRLSRTAKNQKDFKVKALSEWREDKDYAVLTAPFFQYPTTKSQIFKQSLDENVLLFSWEHLAILLQLDLEETNIFSFEQLWNFPKKQSKKTSVSDAENNFMRDFNKYFMDLFKIDKDTLNQLLQKEINFIEERSLIEKEYWKKQINIIKNFTREEAIEALLKDINMSSKIETIDSFIKGIKSNDRLYL |
| Type-2 restriction enzyme HindIII | C | 301 | Haemophilus Influenzae , Synthetic Construct | HMKKSALEKLLSLIENLTNQEFKQATNSLISFIYKLNRNEVIELVRSIGILPEAIKPSSTQEKLFSKAGDIVLAKAFQLLNLNSKPLEQRGNAGDVIALSKEFNYGLVADAKSFRLSRTAKNQKDFKVKALSEWREDKDYAVLTAPFFQYPTTKSQIFKQSLDENVLLFSWEHLAILLQLDLEETNIFSFEQLWNFPKKQSKKTSVSDAENNFMRDFNKYFMDLFKIDKDTLNQLLQKEINFIEERSLIEKEYWKKQINIIKNFTREEAIEALLKDINMSSKIETIDSFIKGIKSNDRLYL |
| Type-2 restriction enzyme HindIII | B | 301 | Haemophilus Influenzae , Synthetic Construct | HMKKSALEKLLSLIENLTNQEFKQATNSLISFIYKLNRNEVIELVRSIGILPEAIKPSSTQEKLFSKAGDIVLAKAFQLLNLNSKPLEQRGNAGDVIALSKEFNYGLVADAKSFRLSRTAKNQKDFKVKALSEWREDKDYAVLTAPFFQYPTTKSQIFKQSLDENVLLFSWEHLAILLQLDLEETNIFSFEQLWNFPKKQSKKTSVSDAENNFMRDFNKYFMDLFKIDKDTLNQLLQKEINFIEERSLIEKEYWKKQINIIKNFTREEAIEALLKDINMSSKIETIDSFIKGIKSNDRLYL |
| Type-2 restriction enzyme HindIII | D | 301 | Haemophilus Influenzae , Synthetic Construct | HMKKSALEKLLSLIENLTNQEFKQATNSLISFIYKLNRNEVIELVRSIGILPEAIKPSSTQEKLFSKAGDIVLAKAFQLLNLNSKPLEQRGNAGDVIALSKEFNYGLVADAKSFRLSRTAKNQKDFKVKALSEWREDKDYAVLTAPFFQYPTTKSQIFKQSLDENVLLFSWEHLAILLQLDLEETNIFSFEQLWNFPKKQSKKTSVSDAENNFMRDFNKYFMDLFKIDKDTLNQLLQKEINFIEERSLIEKEYWKKQINIIKNFTREEAIEALLKDINMSSKIETIDSFIKGIKSNDRLYL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*GP*CP*CP*A)-3') | e | 4 | NA | GCCA |
| DNA (5'-D(*GP*CP*CP*A)-3') | g | 4 | NA | GCCA |
| DNA (5'-D(*GP*CP*CP*A)-3') | i | 4 | NA | GCCA |
| DNA (5'-D(*GP*CP*CP*A)-3') | k | 4 | NA | GCCA |
| DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3') | f | 8 | NA | AGCTTGGC |
| DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3') | h | 8 | NA | AGCTTGGC |
| DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3') | j | 8 | NA | AGCTTGGC |
| DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3') | l | 8 | NA | AGCTTGGC |
| DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3') | m | 12 | NA | GCCAAGCTTGGC |
| DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3') | n | 12 | NA | GCCAAGCTTGGC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2009-07-09 Deposition Author(s): Sato, C. , Takasaki, Y. , Tanaka, I. , Watanabe, N.