2XB2
Crystal structure of the core mago-y14-eif4aiii-barentsz-upf3b assembly shows how the ejc is bridged to the nmd machinery
PDB DOI: 10.2210/pdb2xb2/pdb
Classification: HYDROLASE Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2010-04-03 Deposition Author(s): Basquin, C. , Bono, F. , Buchwald, G. , Conti, E. , Ebert, J. , Jayachandran, U. , Le Hir, H. , Sauliere, J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.4 Å
Crystal structure of the core mago-y14-eif4aiii-barentsz-upf3b assembly shows how the ejc is bridged to the nmd machinery
Basquin, C. , Bono, F. , Buchwald, G. , Conti, E. , Ebert, J. , Jayachandran, U. , Le Hir, H. , Sauliere, J.
Primary Citation of Related Structures: 2XB2
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| EUKARYOTIC INITIATION FACTOR 4A-III | A | 411 | Homo Sapiens , Synthetic Construct | MATTATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI |
| EUKARYOTIC INITIATION FACTOR 4A-III | X | 411 | Homo Sapiens , Synthetic Construct | MATTATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI |
| PROTEIN MAGO NASHI HOMOLOG | C | 146 | Homo Sapiens , Synthetic Construct | MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI |
| PROTEIN MAGO NASHI HOMOLOG | Y | 146 | Homo Sapiens , Synthetic Construct | MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI |
| RNA-BINDING PROTEIN 8A | D | 90 | Homo Sapiens , Synthetic Construct | PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP |
| RNA-BINDING PROTEIN 8A | Z | 90 | Homo Sapiens , Synthetic Construct | PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP |
| PUTATIVE REGULATOR OF NONSENSE TRANSCRIPTS 3B | F | 3 | Homo Sapiens , Synthetic Construct | AER |
| REGULATOR OF NONSENSE TRANSCRIPTS 3B | G | 60 | Homo Sapiens , Synthetic Construct | EVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAAERKQESGISHRKEGGEE |
| REGULATOR OF NONSENSE TRANSCRIPTS 3B | U | 60 | Homo Sapiens , Synthetic Construct | EVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDSTKSGDSAAERKQESGISHRKEGGEE |
| PROTEIN CASC3 | S | 150 | Homo Sapiens , Synthetic Construct | DTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPRYGSPPQRDPNWNGERLNKSHRHQG |
| PROTEIN CASC3 | T | 150 | Homo Sapiens , Synthetic Construct | DTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPRYGSPPQRDPNWNGERLNKSHRHQG |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2010-04-03 Deposition Author(s): Basquin, C. , Bono, F. , Buchwald, G. , Conti, E. , Ebert, J. , Jayachandran, U. , Le Hir, H. , Sauliere, J.