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2RFK

Substrate rna positioning in the archaeal h/aca ribonucleoprotein complex

PDB DOI: 10.2210/pdb2rfk/pdb

Classification: Isomerase/RNA
Organism(s): Pyrococcus Furiosus , Synthetic Construct

Deposited: 2007-09-30
Deposition Author(s): Li, H. , Liang, B. , Southeast Collaboratory For Structural Genomics (Secsg) , Terns, M.P. , Terns, R.M. , Xue, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.87 Å

Literature

Substrate rna positioning in the archaeal h/aca ribonucleoprotein complex

Li, H. , Liang, B. , Southeast Collaboratory For Structural Genomics (Secsg) , Terns, M.P. , Terns, R.M. , Xue, S.

Primary Citation of Related Structures: 2RFK


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
guide RNA 1 d 21 NA GGGCUCCGGAAACCGCGGCGC
guide RNA 2 e 26 NA GCGCUUCGCUCCCGGAGCCCACACUA
target RNA f 14 NA GGAGCGUGCGGUUU

Proteins
Molecule Chains Sequence Length Organism Sequence
Probable tRNA pseudouridine synthase B A 334 Pyrococcus Furiosus , Synthetic Construct EVRRILPADIKREVLIKDENAETNPDWGFPPEKRPIEMHIQFGVINLDKPPGPTSHEVVAWIKKILNLEKAGHGGTLAPKVSGVLPVALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMKEFEGEIIQRPPLRSAVKRRLRTRKVYYIEVLEIEGRDVLFRVGVEAGTYIRSLIHHIGLALGVGAHMSELRRTRSGPFKEDETLITLHDLVDYYYFWKEDGIEEYFRKAIQPMEKAVEHLPKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIMTLKDELVALGKAMMTSQEMLEKTKGIAVDVEKVFMPRDWYPKLWEKRD
Ribosome biogenesis protein Nop10 B 53 Pyrococcus Furiosus , Synthetic Construct FRIRKCPKCGRYTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYRRRWKREVLGI
Small nucleolar rnp similar to gar1 C 74 Pyrococcus Furiosus , Synthetic Construct MKRLGKVLHYAKQGFLIVRTNWVPSLNDRVVDKRLQFVGIVKDVFGPVKMPYVAIKPKVSNPEIYVGEVLYVDE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2007-09-30
Deposition Author(s): Li, H. , Liang, B. , Southeast Collaboratory For Structural Genomics (Secsg) , Terns, M.P. , Terns, R.M. , Xue, S.