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2RDJ

Snapshots of a y-family dna polymerase in replication: dpo4 in apo and binary/ternary complex forms

PDB DOI: 10.2210/pdb2rdj/pdb

Classification: Transferase/DNA
Organism(s): Sulfolobus Solfataricus , Synthetic Construct

Deposited: 2007-09-24
Deposition Author(s): Ling, H. , Wong, J.H.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.2 Å

2rdj
Literature

Snapshots of a y-family dna polymerase in replication: dpo4 in apo and binary/ternary complex forms

Ling, H. , Wong, J.H.Y.

Primary Citation of Related Structures: 2RDJ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3') c 14 NA GGGACCCTTCGAAT
DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3') e 14 NA GGGACCCTTCGAAT
DNA (5'-D(P*DTP*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3') d 16 NA TTATTCGAAGGGTCCC
DNA (5'-D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3') f 15 NA TATTCGAAGGGTCCC

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase IV A 352 Sulfolobus Solfataricus , Synthetic Construct MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT
DNA polymerase IV B 352 Sulfolobus Solfataricus , Synthetic Construct MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFIEAIGLDKFFDT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2007-09-24
Deposition Author(s): Ling, H. , Wong, J.H.Y.