2R1G
Coordinates of the thermus thermophilus 30s components neighboring rbfa as obtained by fitting into the cryo-em map of a 30s-rbfa complex
PDB DOI: 10.2210/pdb2r1g/pdb
Classification: RIBOSOMAL PROTEIN/RNA Organism(s): Scytalidium Thermophilum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2007-08-22 Deposition Author(s): Agrawal, R.K. , Booth, T.M. , Datta, P.P. , Fucini, P. , Kaminishi, T. , Kawazoe, M. , Sharma, M.R. , Swami, N.K. , Takemoto, C. , Wilson, D.N. , Yokoyama, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 12.5 Å
Coordinates of the thermus thermophilus 30s components neighboring rbfa as obtained by fitting into the cryo-em map of a 30s-rbfa complex
Agrawal, R.K. , Booth, T.M. , Datta, P.P. , Fucini, P. , Kaminishi, T. , Kawazoe, M. , Sharma, M.R. , Swami, N.K. , Takemoto, C. , Wilson, D.N. , Yokoyama, S.
Primary Citation of Related Structures: 2R1G
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S RIBOSOMAL RNA HELIX 1 | a | 24 | NA | GGAGAGUUUGAUCCUGGCUCAGGG |
| 16S RIBOSOMAL RNA HELIX 18 | b | 48 | NA | GCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGA |
| 16S RIBOSOMAL RNA HELIX 27 | c | 29 | NA | GGGGAGUACGGCCGCAAGGCUGAAACUCA |
| 16S RIBOSOMAL RNA HELIX 28 | d | 28 | NA | AAUUGACGGGGGCCGCCUUGUACACACC |
| 16S RIBOSOMAL RNA HELIX 44 | e | 11 | NA | CGCCCGUCACG |
| 16S RIBOSOMAL RNA HELIX 44 | x | 11 | NA | CGAAGUCGUAA |
| 16S RIBOSOMAL RNA HELIX 45 | f | 29 | NA | CAAGGUAGCUGUACCGGAAGGUGCGGCUG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S13 | I | 125 | Scytalidium Thermophilum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKKAPRK |
| 30S ribosomal protein S9 | G | 127 | Scytalidium Thermophilum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR |
| 30S ribosomal protein S12 | H | 124 | Scytalidium Thermophilum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKYGTKKPKEA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2007-08-22 Deposition Author(s): Agrawal, R.K. , Booth, T.M. , Datta, P.P. , Fucini, P. , Kaminishi, T. , Kawazoe, M. , Sharma, M.R. , Swami, N.K. , Takemoto, C. , Wilson, D.N. , Yokoyama, S.