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FASTA Sequence PDB Format mmCIF Format
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2QKK

Human rnase h catalytic domain mutant d210n in complex with 14-mer rna/dna hybrid

PDB DOI: 10.2210/pdb2qkk/pdb

Classification: HYDROLASE/DNA/RNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2007-07-11
Deposition Author(s): Cerritelli, S.M. , Crouch, R.J. , Gaidamakov, S.A. , Ghirlando, R. , Nowotny, M. , Yang, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.2 Å

Literature

Human rnase h catalytic domain mutant d210n in complex with 14-mer rna/dna hybrid

Cerritelli, S.M. , Crouch, R.J. , Gaidamakov, S.A. , Ghirlando, R. , Nowotny, M. , Yang, W.

Primary Citation of Related Structures: 2QKK


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3' c 14 NA CGACACCUGAUUCC
5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3' g 14 NA CGACACCUGAUUCC
5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3' k 14 NA CGACACCUGAUUCC
5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3' o 14 NA CGACACCUGAUUCC
5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3' t 14 NA CGACACCUGAUUCC
5'-R(*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3' x 14 NA CGACACCUGAUUCC
5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3' d 14 NA GGAATCAGGTGTCG
5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3' h 14 NA GGAATCAGGTGTCG
5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3' l 14 NA GGAATCAGGTGTCG
5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3' p 14 NA GGAATCAGGTGTCG
5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3' u 14 NA GGAATCAGGTGTCG
5'-D(*GP*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*CP*G)-3' z 14 NA GGAATCAGGTGTCG

Proteins
Molecule Chains Sequence Length Organism Sequence
Ribonuclease H1 A 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 B 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 E 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 F 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 I 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 J 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 M 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 N 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 R 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 S 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Ribonuclease H1 W 154 Homo Sapiens , Synthetic Construct GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2007-07-11
Deposition Author(s): Cerritelli, S.M. , Crouch, R.J. , Gaidamakov, S.A. , Ghirlando, R. , Nowotny, M. , Yang, W.