2Q2U
Structure of chlorella virus dna ligase-product dna complex
PDB DOI: 10.2210/pdb2q2u/pdb
Classification: LIGASE/DNA Organism(s): Paramecium Bursaria Chlorella Virus 1 , Synthetic Construct
Deposited: 2007-05-29 Deposition Author(s): Lima, C.D. , Nair, P.A. , Nandakumar, J. , Shuman, S. , Smith, P.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3 Å
Structure of chlorella virus dna ligase-product dna complex
Lima, C.D. , Nair, P.A. , Nandakumar, J. , Shuman, S. , Smith, P.
Primary Citation of Related Structures: 2Q2U
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3' | e | 21 | NA | TTCCGATAGTGGGGTCGCAAT |
| 5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3' | g | 21 | NA | TTCCGATAGTGGGGTCGCAAT |
| 5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3' | i | 21 | NA | TTCCGATAGTGGGGTCGCAAT |
| 5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3' | k | 21 | NA | TTCCGATAGTGGGGTCGCAAT |
| 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3' | f | 21 | NA | ATTGCGACCCCACTATCGGAA |
| 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3' | h | 21 | NA | ATTGCGACCCCACTATCGGAA |
| 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3' | j | 21 | NA | ATTGCGACCCCACTATCGGAA |
| 5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*CP*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3' | l | 21 | NA | ATTGCGACCCCACTATCGGAA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Chlorella virus DNA ligase | A | 319 | Paramecium Bursaria Chlorella Virus 1 , Synthetic Construct | MGHHHHHHHHHHSSGHIEGRHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR |
| Chlorella virus DNA ligase | B | 319 | Paramecium Bursaria Chlorella Virus 1 , Synthetic Construct | MGHHHHHHHHHHSSGHIEGRHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR |
| Chlorella virus DNA ligase | C | 319 | Paramecium Bursaria Chlorella Virus 1 , Synthetic Construct | MGHHHHHHHHHHSSGHIEGRHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR |
| Chlorella virus DNA ligase | D | 319 | Paramecium Bursaria Chlorella Virus 1 , Synthetic Construct | MGHHHHHHHHHHSSGHIEGRHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2007-05-29 Deposition Author(s): Lima, C.D. , Nair, P.A. , Nandakumar, J. , Shuman, S. , Smith, P.