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2Q2T

Structure of chlorella virus dna ligase-adenylate bound to a 5' phosphorylated nick

PDB DOI: 10.2210/pdb2q2t/pdb

Classification: LIGASE/DNA
Organism(s): Listeria Monocytogenes Str. 4B H7858 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2007-05-29
Deposition Author(s): Lima, C.D. , Nair, P.A. , Nandakumar, J. , Shuman, S. , Smith, P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

Literature

Structure of chlorella virus dna ligase-adenylate bound to a 5' phosphorylated nick

Lima, C.D. , Nair, P.A. , Nandakumar, J. , Shuman, S. , Smith, P.

Primary Citation of Related Structures: 2Q2T


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3' b 21 NA TTCCGATAGTGGGGTCGCAAT
5'-D(*AP*TP*TP*GP*CP*GP*AP*CP*(OMC)P*C)-3' c 10 NA ATTGCGACCC
5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3' d 11 NA CACTATCGGAA

Proteins
Molecule Chains Sequence Length Organism Sequence
Chlorella virus DNA ligase A 319 Listeria Monocytogenes Str. 4B H7858 , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MGHHHHHHHHHHSSGHIEGRHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2007-05-29
Deposition Author(s): Lima, C.D. , Nair, P.A. , Nandakumar, J. , Shuman, S. , Smith, P.