2NOQ
Structure of ribosome-bound cricket paralysis virus ires rna
PDB DOI: 10.2210/pdb2noq/pdb
Classification: RIBOSOME Organism(s): Saccharomyces Cerevisiae , Synthetic Construct
Deposited: 2006-10-26 Deposition Author(s): Connell, S.R. , Dabrowski, M. , Giesebrecht, J. , Lescoute, A. , Mielke, T. , Penczek, P.A. , Schroeer, B. , Schuler, M. , Spahn, C.M.T. , Westhof, E.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 7.3 Å
Structure of ribosome-bound cricket paralysis virus ires rna
Connell, S.R. , Dabrowski, M. , Giesebrecht, J. , Lescoute, A. , Mielke, T. , Penczek, P.A. , Schroeer, B. , Schuler, M. , Spahn, C.M.T. , Westhof, E.
Primary Citation of Related Structures: 2NOQ
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CrPV IRES | a | 190 | NA | AAAAAUGUGAUCUUGCUUGUAAAUACAAUUUUGAGAGGUUAAUAAAUUACAAGUAGUGCUAUUUUUGUAUUUAGGUUAGCUAUUUAGCUUUACGUUCCAGGAUGCCUAGUGGCAGCCCCACAAUAUCCAGGAAGCCCUCUCUGCGGUUUUUCAGAUUAGGUAGUCGAAAAACCUAAGAAAUUUACCUGCU |
| 18S ribosomal RNA | b | 46 | NA | GCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGC |
| 18S ribosomal RNA | c | 13 | NA | GCUGCAUGGCCGU |
| 18S ribosomal RNA | d | 15 | NA | UCUGGUCAGCAUGGC |
| 25S ribosomal RNA | e | 53 | NA | GGGAUGCGUAGGAUAGGUGGGAGCGCAAGCGCCGGUGAAAUACCACCCUUCCC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 40S ribosomal protein S5 | F | 150 | Saccharomyces Cerevisiae , Synthetic Construct | RYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR |
| 60S ribosomal protein L1 | G | 213 | Saccharomyces Cerevisiae , Synthetic Construct | ITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRL |
| 60S ribosomal protein L11-B | H | 165 | Saccharomyces Cerevisiae , Synthetic Construct | NPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADV |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2006-10-26 Deposition Author(s): Connell, S.R. , Dabrowski, M. , Giesebrecht, J. , Lescoute, A. , Mielke, T. , Penczek, P.A. , Schroeer, B. , Schuler, M. , Spahn, C.M.T. , Westhof, E.