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2ISP

Ternary complex of dna polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate

PDB DOI: 10.2210/pdb2isp/pdb

Classification: TRANSFERASE/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2006-10-18
Deposition Author(s): Beard, W.A. , Kashemirov, B.A. , Martinek, V. , Sucato, C.A. , Upton, T.G. , Xiang, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.2 Å

2isp
Literature

Ternary complex of dna polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-methylene triphosphate

Beard, W.A. , Kashemirov, B.A. , Martinek, V. , Sucato, C.A. , Upton, T.G. , Xiang, Y.

Primary Citation of Related Structures: 2ISP


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' t 16 NA CCGACCGCGCATCAGC
5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3' p 10 NA GCTGATGCGC
5'-D(P*GP*TP*CP*GP*G)-3' d 5 NA GTCGG

Proteins
Molecule Chains Sequence Length Organism Sequence
Polymerase (DNA directed), beta A 335 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2006-10-18
Deposition Author(s): Beard, W.A. , Kashemirov, B.A. , Martinek, V. , Sucato, C.A. , Upton, T.G. , Xiang, Y.