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FASTA Sequence PDB Format mmCIF Format
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2IPK

Crystal structure of the mhc class ii molecule hla-dr1 in complex with the fluorogenic peptide, acpkxvkqntlklat (x=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2h-isoindol-2-yl]-l-alanine) and the superantigen, sec3 variant 3b2

PDB DOI: 10.2210/pdb2ipk/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Staphylococcus Aureus Subsp. Aureus Mu50 , Synthetic Construct

Deposited: 2006-10-12
Deposition Author(s): Nguyen, T.T. , Stern, L.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

2ipk
Literature

Crystal structure of the mhc class ii molecule hla-dr1 in complex with the fluorogenic peptide, acpkxvkqntlklat (x=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2h-isoindol-2-yl]-l-alanine) and the superantigen, sec3 variant 3b2

Nguyen, T.T. , Stern, L.J.

Primary Citation of Related Structures: 2IPK


Proteins
Molecule Chains Sequence Length Organism Sequence
HLA class II histocompatibility antigen, DR alpha chain A 183 Homo Sapiens , Staphylococcus Aureus Subsp. Aureus Mu50 , Synthetic Construct MIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDA
HLA class II histocompatibility antigen, DRB1-1 beta chain B 190 Homo Sapiens , Staphylococcus Aureus Subsp. Aureus Mu50 , Synthetic Construct GDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA
HA related Fluorogenic Peptide, AcPKXVKQNTLKLAT (X=3-[5-(dimethylamino)-1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl]-L-alanine) C 14 Homo Sapiens , Staphylococcus Aureus Subsp. Aureus Mu50 , Synthetic Construct XPKWVKQNTLKLAT
Enterotoxin type C-3 D 240 Homo Sapiens , Staphylococcus Aureus Subsp. Aureus Mu50 , Synthetic Construct MESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDSFFKWDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2006-10-12
Deposition Author(s): Nguyen, T.T. , Stern, L.J.