PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

2I9T

Structure of nf-kb p65-p50 heterodimer bound to prdii element of b-interferon promoter

PDB DOI: 10.2210/pdb2i9t/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Mus Musculus , Synthetic Construct

Deposited: 2006-09-06
Deposition Author(s): Aggarwal, A.K. , Escalante, C.R. , Shen, L. , Thanos, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.8 Å

2i9t
Literature

Structure of nf-kb p65-p50 heterodimer bound to prdii element of b-interferon promoter

Aggarwal, A.K. , Escalante, C.R. , Shen, L. , Thanos, D.

Primary Citation of Related Structures: 2I9T


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*AP*GP*TP*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*TP*CP*TP*G)-3' c 17 NA AGTGGGAAATTCCTCTG
5'-D(*CP*AP*GP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*CP*AP*CP*T)-3' d 17 NA CAGAGGAATTTCCCACT

Proteins
Molecule Chains Sequence Length Organism Sequence
Transcription factor p65 A 279 Mus Musculus , Synthetic Construct GSHMHAPYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKDCRDGYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHVPIEEQRGDYDLNAVRLCFQVTVRDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPD
Nuclear factor NF-kappa-B p105 subunit B 313 Mus Musculus , Synthetic Construct MGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2006-09-06
Deposition Author(s): Aggarwal, A.K. , Escalante, C.R. , Shen, L. , Thanos, D.