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2HVS

Structure of t4 rna ligase 2 with nicked 5'-adenylated nucleic acid duplex containing a 2'-deoxyribonucleotide at the nick

PDB DOI: 10.2210/pdb2hvs/pdb

Classification: LIGASE/DNA/RNA
Organism(s): Enterobacteria Phage T4 , Synthetic Construct

Deposited: 2006-07-30
Deposition Author(s): Lima, C.D. , Nandakumar, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

Literature

Structure of t4 rna ligase 2 with nicked 5'-adenylated nucleic acid duplex containing a 2'-deoxyribonucleotide at the nick

Lima, C.D. , Nandakumar, J.

Primary Citation of Related Structures: 2HVS


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*TP*TP*G)-3' c 24 NA ATTCCGATAGTGGGGTCGCAATTG
5'-D(*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*TP*TP*G)-3' f 24 NA ATTCCGATAGTGGGGTCGCAATTG
5'-D(*CP*AP*AP*TP*TP*GP*CP*GP*AP*C)-R(P*(OMC)P*C)-3' d 12 NA CAATTGCGACCC
5'-D(*CP*AP*AP*TP*TP*GP*CP*GP*AP*C)-R(P*(OMC)P*C)-3' g 12 NA CAATTGCGACCC
5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*T)-3' e 12 NA CACTATCGGAAT
5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*AP*T)-3' h 12 NA CACTATCGGAAT

Proteins
Molecule Chains Sequence Length Organism Sequence
T4 RNA Ligase 2 A 335 Enterobacteria Phage T4 , Synthetic Construct SMFKKYSSLENHYNSKFIEKLYSLGLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPGIQKNVDYGDKDFYVFDIIVTTESGDVTYVDDYMMESFCNTFKFKMAPLLGRGKFEELIKLPNDLDSVVQDYNFTVDHAGLVDANKCVWNAEAKGEVFTAEGYVLKPCYPSWLRNGNRVAIKCKNSKFSEKKKSDKPIKAKVELSEADNKLVGILACYVTLNRVNNVISKIGEIGPKDFGKVMGLTVQDILEETSREGITLTQADNPSLIKKELVKMVQDVLRPAWIELVS
T4 RNA Ligase 2 B 335 Enterobacteria Phage T4 , Synthetic Construct SMFKKYSSLENHYNSKFIEKLYSLGLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNYADSIKAVQDIMETSAVVSYQVFGEFAGPGIQKNVDYGDKDFYVFDIIVTTESGDVTYVDDYMMESFCNTFKFKMAPLLGRGKFEELIKLPNDLDSVVQDYNFTVDHAGLVDANKCVWNAEAKGEVFTAEGYVLKPCYPSWLRNGNRVAIKCKNSKFSEKKKSDKPIKAKVELSEADNKLVGILACYVTLNRVNNVISKIGEIGPKDFGKVMGLTVQDILEETSREGITLTQADNPSLIKKELVKMVQDVLRPAWIELVS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2006-07-30
Deposition Author(s): Lima, C.D. , Nandakumar, J.