2HVI
Ddctp:g pair in the polymerase active site (0 position)
PDB DOI: 10.2210/pdb2hvi/pdb
Classification: Transferase/DNA Organism(s): Geobacillus Stearothermophilus , Synthetic Construct
Deposited: 2006-07-28 Deposition Author(s): Beese, L.S. , Forsberg, L.J. , Warren, J.J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.98 Å
Ddctp:g pair in the polymerase active site (0 position)
Beese, L.S. , Forsberg, L.J. , Warren, J.J.
Primary Citation of Related Structures: 2HVI
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | b | 9 | NA | CCTGACTCG |
| 5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DDG))-3' | e | 9 | NA | CCTGACTCG |
| 5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3' | c | 13 | NA | CATGCGAGTCAGG |
| 5'-D(*C*AP*TP*GP*CP*GP*AP*GP*TP*CP*AP*GP*G)-3' | f | 13 | NA | CATGCGAGTCAGG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA Polymerase I | A | 580 | Geobacillus Stearothermophilus , Synthetic Construct | KKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK |
| DNA Polymerase I | D | 580 | Geobacillus Stearothermophilus , Synthetic Construct | KKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2006-07-28 Deposition Author(s): Beese, L.S. , Forsberg, L.J. , Warren, J.J.