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FASTA Sequence PDB Format mmCIF Format
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2GJW

Rna recognition and cleavage by an splicing endonuclease

PDB DOI: 10.2210/pdb2gjw/pdb

Classification: Hydrolase/RNA
Organism(s): Archaeoglobus Fulgidus , Synthetic Construct

Deposited: 2006-03-31
Deposition Author(s): Calvin, K. , Li, H. , Xue, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å

2gjw
Literature

Rna recognition and cleavage by an splicing endonuclease

Calvin, K. , Li, H. , Xue, S.

Primary Citation of Related Structures: 2GJW


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-R(*GP*CP*GP*AP*CP*CP*GP*AP*CP*CP*AP*(DU)P*AP*GP*CP*UP*GP*CP*A)-3' e 19 NA GCGACCGACCAUAGCUGCA
5'-R(*GP*CP*GP*AP*CP*CP*GP*AP*CP*CP*AP*(DU)P*AP*GP*CP*UP*GP*CP*A)-3' i 19 NA GCGACCGACCAUAGCUGCA
5'-R(*UP*GP*CP*AP*GP*CP*GP*GP*UP*CP*AP*(A23))-3' f 12 NA UGCAGCGGUCAA
5'-R(*UP*GP*CP*AP*GP*CP*GP*GP*UP*CP*AP*(A23))-3' j 12 NA UGCAGCGGUCAA
5'-R(*AP*GP*GP*UP*CP*GP*C)-3' h 7 NA AGGUCGC
5'-R(*AP*GP*GP*UP*CP*GP*C)-3' l 7 NA AGGUCGC

Proteins
Molecule Chains Sequence Length Organism Sequence
tRNA-splicing endonuclease A 313 Archaeoglobus Fulgidus , Synthetic Construct MHHHHHHHHIGGDFAVVKAKKSLERRGFGVKRGDKIYLHPLEVVYLQIKGIESFGELEDVLSWAESRMEDFSTYYFVYEDLRDRGNKVKIQGEFLLTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGEQKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLNADREELVKRAREVERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV
tRNA-splicing endonuclease B 313 Archaeoglobus Fulgidus , Synthetic Construct MHHHHHHHHIGGDFAVVKAKKSLERRGFGVKRGDKIYLHPLEVVYLQIKGIESFGELEDVLSWAESRMEDFSTYYFVYEDLRDRGNKVKIQGEFLLTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGEQKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLNADREELVKRAREVERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV
tRNA-splicing endonuclease C 313 Archaeoglobus Fulgidus , Synthetic Construct MHHHHHHHHIGGDFAVVKAKKSLERRGFGVKRGDKIYLHPLEVVYLQIKGIESFGELEDVLSWAESRMEDFSTYYFVYEDLRDRGNKVKIQGEFLLTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGEQKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLNADREELVKRAREVERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV
tRNA-splicing endonuclease D 313 Archaeoglobus Fulgidus , Synthetic Construct MHHHHHHHHIGGDFAVVKAKKSLERRGFGVKRGDKIYLHPLEVVYLQIKGIESFGELEDVLSWAESRMEDFSTYYFVYEDLRDRGNKVKIQGEFLLTKKPYLPISERKTIRMEEIAEKARNFDELRLAVVDEESEITYFRVYEPDMMGEQKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEKGDLVTLSLIESLYLLDLGKLNLLNADREELVKRAREVERNFDRRYEVYRNLKERGFVVKTGFKFGSEFRVYRKVESVDDLPHSEYLVDIADSREIRLIDLARAVRLAQNVRKRMVFAYGKNYLCFERVKV
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2006-03-31
Deposition Author(s): Calvin, K. , Li, H. , Xue, S.