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2FCC
Crystal structure of t4 pyrimidine dimer glycosylase (t4-pdg) covalently complexed with a dna substrate containing abasic site
PDB DOI: 10.2210/pdb2fcc/pdb
Classification: HYDROLASE Organism(s): Bartonella Clarridgeiae , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2005-12-12 Deposition Author(s): Dodson, M.L. , Fernandes, A.S. , Golan, G. , Grollman, A.P. , Lloyd, R.S. , Mccullough, A.K. , Shoham, G. , Zharkov, D.O.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.3 Å
Crystal structure of t4 pyrimidine dimer glycosylase (t4-pdg) covalently complexed with a dna substrate containing abasic site
Dodson, M.L. , Fernandes, A.S. , Golan, G. , Grollman, A.P. , Lloyd, R.S. , Mccullough, A.K. , Shoham, G. , Zharkov, D.O.
Primary Citation of Related Structures: 2FCC
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3') | c | 13 | NA | CCAGGAXGAAGCC |
| DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3') | e | 13 | NA | CCAGGAXGAAGCC |
| DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3') | d | 13 | NA | GGCUUCAUCCUGG |
| DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3') | f | 13 | NA | GGCUUCAUCCUGG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Endonuclease V | A | 137 | Bartonella Clarridgeiae , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | TRINLTLVSELADQHLMAEYRELPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA |
| Endonuclease V | B | 137 | Bartonella Clarridgeiae , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | TRINLTLVSELADQHLMAEYRELPRVFGAVRKHVANGKRVRDFKISPTFILGAGHVTFFYDKLEFLRKRQIELIAECLKRGFNIKDTTVQDISDIPQEFRGDYIPHEASIAISQARLDEKIAQRPTWYKYYGKAIYA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2005-12-12 Deposition Author(s): Dodson, M.L. , Fernandes, A.S. , Golan, G. , Grollman, A.P. , Lloyd, R.S. , Mccullough, A.K. , Shoham, G. , Zharkov, D.O.