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2DEM

Crystal structure of uracil-dna glycosylase in complex with ap:a containing dna

PDB DOI: 10.2210/pdb2dem/pdb

Classification: HYDROLASE/DNA
Organism(s): Scytalidium Thermophilum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2006-02-13
Deposition Author(s): Hoseki, J. , Kosaka, H. , Kuramitsu, S. , Masui, R. , Nakagawa, N. , Riken Structural Genomics/Proteomics Initiative (Rsgi)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å

2dem
Literature

Crystal structure of uracil-dna glycosylase in complex with ap:a containing dna

Hoseki, J. , Kosaka, H. , Kuramitsu, S. , Masui, R. , Nakagawa, N. , Riken Structural Genomics/Proteomics Initiative (Rsgi)

Primary Citation of Related Structures: 2DEM


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*AP*TP*GP*TP*TP*GP*CP*(D1P)P*TP*TP*AP*GP*TP*CP*C)-3' c 15 NA ATGTTGCXTTAGTCC
5'-D(*GP*GP*AP*CP*TP*AP*AP*AP*GP*CP*AP*AP*CP*A)-3' d 14 NA GGACTAAAGCAACA

Proteins
Molecule Chains Sequence Length Organism Sequence
uracil-DNA glycosylase A 219 Scytalidium Thermophilum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDREAFVQTLTACRLCPRLVAWREEVVGRKRAFRGEPYWARPVPGFGDPEARILLFGLAPGAHGSNRTGRPFTGDASGAFLYPLLHEAGLSSKPESLPGDDLRLYGVYLTAAVRCAPPKNKPTPEELRACARWTEVELGLLPEVRVYVALGRIALEALLAHFGLRKSAHPFRHGAHYPLPGGRHLLASYHVSRQNTQTGRLTREMFLEVLMEAKRLAGL
Experimental Data

Method: X-RAY DIFFRACTION