2DB3
Structural basis for rna unwinding by the dead-box protein drosophila vasa
PDB DOI: 10.2210/pdb2db3/pdb
Classification: HYDROLASE/RNA Organism(s): Drosophila Melanogaster , Synthetic Construct
Deposited: 2005-12-14 Deposition Author(s): Kobayashi, S. , Nakamura, A. , Nureki, O. , Riken Structural Genomics/Proteomics Initiative (Rsgi) , Sengoku, T. , Yokoyama, S.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.2 Å
Structural basis for rna unwinding by the dead-box protein drosophila vasa
Kobayashi, S. , Nakamura, A. , Nureki, O. , Riken Structural Genomics/Proteomics Initiative (Rsgi) , Sengoku, T. , Yokoyama, S.
Primary Citation of Related Structures: 2DB3
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | e | 10 | NA | UUUUUUUUUU |
| 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | f | 10 | NA | UUUUUUUUUU |
| 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | g | 10 | NA | UUUUUUUUUU |
| 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | h | 10 | NA | UUUUUUUUUU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ATP-dependent RNA helicase vasa | A | 434 | Drosophila Melanogaster , Synthetic Construct | GPLGSPEFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC |
| ATP-dependent RNA helicase vasa | B | 434 | Drosophila Melanogaster , Synthetic Construct | GPLGSPEFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC |
| ATP-dependent RNA helicase vasa | C | 434 | Drosophila Melanogaster , Synthetic Construct | GPLGSPEFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC |
| ATP-dependent RNA helicase vasa | D | 434 | Drosophila Melanogaster , Synthetic Construct | GPLGSPEFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2005-12-14 Deposition Author(s): Kobayashi, S. , Nakamura, A. , Nureki, O. , Riken Structural Genomics/Proteomics Initiative (Rsgi) , Sengoku, T. , Yokoyama, S.