2C7U
Conflicting selective forces affect cd8 t-cell receptor contact sites in an hla-a2 immunodominant hiv epitope.
PDB DOI: 10.2210/pdb2c7u/pdb
Classification: GLYCOPROTEIN/PEPTIDE Organism(s): Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2005-11-29 Deposition Author(s): Armitage, A.E. , Beattie, T. , Buus, S. , Chotiyarnwong, P. , Christie, N. , Dong, T. , Fugger, J.L. , Iversen, A.K. , Jones, E.Y. , Kaul, R. , Klarlund-Pedersen, B. , Learn, G.H. , Lee, J.K. , Li, Y. , Luscher, M.A. , Macdonald, K. , Mcmichael, A.J. , Mullins, J.I. , Skinhoj, P. , Stewart-Jones, G. , Sylvester-Hviid, C. , Ullum, H. , Van Der Merwe, P.A. , Xu, X.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.38 Å
Conflicting selective forces affect cd8 t-cell receptor contact sites in an hla-a2 immunodominant hiv epitope.
Armitage, A.E. , Beattie, T. , Buus, S. , Chotiyarnwong, P. , Christie, N. , Dong, T. , Fugger, J.L. , Iversen, A.K. , Jones, E.Y. , Kaul, R. , Klarlund-Pedersen, B. , Learn, G.H. , Lee, J.K. , Li, Y. , Luscher, M.A. , Macdonald, K. , Mcmichael, A.J. , Mullins, J.I. , Skinhoj, P. , Stewart-Jones, G. , Sylvester-Hviid, C. , Ullum, H. , Van Der Merwe, P.A. , Xu, X.
Primary Citation of Related Structures: 2C7U
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN | A | 276 | Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP |
| HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN | D | 276 | Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP |
| BETA-2-MICROGLOBULIN | B | 100 | Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| BETA-2-MICROGLOBULIN | E | 100 | Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| GAG PROTEIN | C | 9 | Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | SLFNTIAVL |
| GAG PROTEIN | F | 9 | Sordaria Macrospora (Strain Atcc Mya-333 / Dsm 997 / K(L3346) / K-Hell) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | SLFNTIAVL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2005-11-29 Deposition Author(s): Armitage, A.E. , Beattie, T. , Buus, S. , Chotiyarnwong, P. , Christie, N. , Dong, T. , Fugger, J.L. , Iversen, A.K. , Jones, E.Y. , Kaul, R. , Klarlund-Pedersen, B. , Learn, G.H. , Lee, J.K. , Li, Y. , Luscher, M.A. , Macdonald, K. , Mcmichael, A.J. , Mullins, J.I. , Skinhoj, P. , Stewart-Jones, G. , Sylvester-Hviid, C. , Ullum, H. , Van Der Merwe, P.A. , Xu, X.