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2BDP

Crystal structure of bacillus dna polymerase i fragment complexed to 9 base pairs of duplex dna

PDB DOI: 10.2210/pdb2bdp/pdb

Classification: TRANSFERASE/DNA
Organism(s): Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 1997-11-17
Deposition Author(s): Beese, L.S. , Kiefer, J.R. , Mao, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.8 Å

Literature

Crystal structure of bacillus dna polymerase i fragment complexed to 9 base pairs of duplex dna

Beese, L.S. , Kiefer, J.R. , Mao, C.

Primary Citation of Related Structures: 2BDP


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*GP*C)-3') p 9 NA GCATGATGC
DNA (5'-D(P*AP*GP*CP*AP*TP*CP*AP*TP*GP*C)-3') t 10 NA AGCATCATGC

Proteins
Molecule Chains Sequence Length Organism Sequence
PROTEIN (DNA POLYMERASE I) A 580 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AAMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVRAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 1997-11-17
Deposition Author(s): Beese, L.S. , Kiefer, J.R. , Mao, C.