2AGN
Fitting of hepatitis c virus internal ribosome entry site domains into the 15 a cryo-em map of a hcv ires-80s ribosome (h. sapiens) complex
PDB DOI: 10.2210/pdb2agn/pdb
Classification: RNA Organism(s): N.A.
Deposited: 2005-07-27 Deposition Author(s): Boehringer, D. , Lewis, J.D. , Ostareck-Lederer, A. , Stark, H. , Thermann, R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 15.0 Å
Fitting of hepatitis c virus internal ribosome entry site domains into the 15 a cryo-em map of a hcv ires-80s ribosome (h. sapiens) complex
Boehringer, D. , Lewis, J.D. , Ostareck-Lederer, A. , Stark, H. , Thermann, R.
Primary Citation of Related Structures: 2AGN
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HCV-1B IRES RNA SUB-DOMAIN IIID | a | 29 | NA | GGCCGAGUAGUGUUGGGUCGCGAAAGGCC |
| HCV IRES SUB-DOMAIN IIIB | b | 30 | NA | GGCGCUCAAUGCUCUUCGGAGACGACCGCC |
| HCV IRES DOMAIN II | c | 77 | NA | GGCUGUGAGGAACUACUGUCUUCACGCAGAAAGCGUCUAGCCAUGGCGUUAGUAUGAGUGUCGUGCAGCCUCCAGCC |
| 6 nt A-RNA helix | d | 14 | NA | CCCGGGGCCCGGGG |
| HCV IRES IIIABC | e | 53 | NA | GGCGGAACCGGUGAGUACACCGGAAUCCGAAAGGAUUUGGGCGUGCCCCCGCC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2005-07-27 Deposition Author(s): Boehringer, D. , Lewis, J.D. , Ostareck-Lederer, A. , Stark, H. , Thermann, R.