1Z8Y
Mapping the e2 glycoprotein of alphaviruses
PDB DOI: 10.2210/pdb1z8y/pdb
Classification: VIRUS Organism(s): Sindbis Virus
Deposited: 2005-03-31 Deposition Author(s): Baker, T.S. , Chipman, P.R. , Gabler, S. , Kuhn, R.J. , Mukhopadhyay, S. , Rossmann, M.G. , Strauss, E.G. , Strauss, J.H. , Zhang, W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 9.0 Å
Mapping the e2 glycoprotein of alphaviruses
Baker, T.S. , Chipman, P.R. , Gabler, S. , Kuhn, R.J. , Mukhopadhyay, S. , Rossmann, M.G. , Strauss, E.G. , Strauss, J.H. , Zhang, W.
Primary Citation of Related Structures: 1Z8Y
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike glycoprotein E1 | A | 290 | Sindbis Virus | YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRT |
| Spike glycoprotein E1 | C | 290 | Sindbis Virus | YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRT |
| Spike glycoprotein E1 | E | 290 | Sindbis Virus | YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRT |
| Spike glycoprotein E1 | G | 290 | Sindbis Virus | YEHATTVPNVPQIPYKALVERAGYAPLNLEITVMSSEVLPSTNQEYITCKFTTVVPSPKIKCCGSLECQPAAHADYTCKVFGGVYPFMWGGAQCFCDSENSQMSEAYVELSADCASDHAQAIKVHTAAMKVGLRIVYGNTTSFLDVYVNGVTPGTSKDLKVIAGPISASFTPFDHKVVIHRGLVYNYDFPEYGAMKPGAFGDIQATSLTSKDLIASTDIRLLKPSAKNVHVPYTQASSGFEMWKNNSGRPLQETAPFGCKIAVNPLRAVDCSYGNIPISIDIPNAAFIRT |
| Spike glycoprotein E1 | B | 89 | Sindbis Virus | LVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAECKPP |
| Spike glycoprotein E1 | D | 89 | Sindbis Virus | LVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAECKPP |
| Spike glycoprotein E1 | F | 89 | Sindbis Virus | LVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAECKPP |
| Spike glycoprotein E1 | H | 89 | Sindbis Virus | LVSTVKCEVSECTYSADFGGMATLQYVSDREGQCPVHSHSSTATLQESTVHVLEKGAVTVHFSTASPQANFIVSLCGKKTTCNAECKPP |
| Spike glycoprotein E1 | I | 31 | Sindbis Virus | WLFALFGGASSLLIIGLMIFACSMMLTSTRR |
| Spike glycoprotein E1 | K | 31 | Sindbis Virus | WLFALFGGASSLLIIGLMIFACSMMLTSTRR |
| Spike glycoprotein E1 | M | 31 | Sindbis Virus | WLFALFGGASSLLIIGLMIFACSMMLTSTRR |
| Spike glycoprotein E1 | O | 31 | Sindbis Virus | WLFALFGGASSLLIIGLMIFACSMMLTSTRR |
| Spike glycoprotein E2 | J | 36 | Sindbis Virus | HPVYTILAVASATVAMMIGVTVAVLCACLARRECLT |
| Spike glycoprotein E2 | L | 36 | Sindbis Virus | HPVYTILAVASATVAMMIGVTVAVLCACLARRECLT |
| Spike glycoprotein E2 | N | 36 | Sindbis Virus | HPVYTILAVASATVAMMIGVTVAVLCACLARRECLT |
| Spike glycoprotein E2 | P | 36 | Sindbis Virus | HPVYTILAVASATVAMMIGVTVAVLCACLARRECLT |
| Capsid protein C | Q | 151 | Sindbis Virus | RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW |
| Capsid protein C | R | 151 | Sindbis Virus | RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW |
| Capsid protein C | S | 151 | Sindbis Virus | RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW |
| Capsid protein C | T | 151 | Sindbis Virus | RLFDVKNEDGDVIGHALAMEGKVMKPLHVKGTIDHPVLSKLKFTKSSAYDMEFAQLPVNMRSEAFTYTSEHPEGFYNWHHGAVQYSGGRFTIPRGVGGRGDSGRPIMDNSGRVVAIVLGGADEGTRTALSVVTWNSKGKTIKTTPEGTEEW |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2005-03-31 Deposition Author(s): Baker, T.S. , Chipman, P.R. , Gabler, S. , Kuhn, R.J. , Mukhopadhyay, S. , Rossmann, M.G. , Strauss, E.G. , Strauss, J.H. , Zhang, W.