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1YYL
Crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody 17b
PDB DOI: 10.2210/pdb1yyl/pdb
Classification: Viral protein/Immune system Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct
Deposited: 2005-02-25 Deposition Author(s): Barthe, P. , Decker, J.M. , Hendrickson, W.A. , Huang, C.C. , Kwong, P.D. , Majeed, S. , Martin, L. , Robinson, J. , Roumestand, C. , Shaw, G.M. , Sodroski, J. , Stricher, F. , Vita, C. , Wyatt, R.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.75 Å
Crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody 17b
Barthe, P. , Decker, J.M. , Hendrickson, W.A. , Huang, C.C. , Kwong, P.D. , Majeed, S. , Martin, L. , Robinson, J. , Roumestand, C. , Shaw, G.M. , Sodroski, J. , Stricher, F. , Vita, C. , Wyatt, R.
Primary Citation of Related Structures: 1YYL
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120) | G | 313 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | GARSEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVGAGSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTGAGHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE |
| Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120) | P | 313 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | GARSEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVGAGSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTGAGHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE |
| antibody 17b light chain | L | 214 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | DIVMTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG |
| antibody 17b light chain | Q | 214 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | DIVMTQSPATLSVSPGERATLSCRASESVSSDLAWYQQKPGQAPRLLIYGASTRATGVPARFSGSGSGAEFTLTISSLQSEDFAVYYCQQYNNWPPRYTFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG |
| antibody 17b heavy chain | H | 229 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | EVQLVESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
| antibody 17b heavy chain | R | 229 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | EVQLVESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNGFLKHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
| CD4M33, scorpion-toxin mimic of CD4 | M | 27 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | XNLHFCQLRCKSLGLLGKCAGSFCACX |
| CD4M33, scorpion-toxin mimic of CD4 | S | 27 | Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct | XNLHFCQLRCKSLGLLGKCAGSFCACX |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2005-02-25 Deposition Author(s): Barthe, P. , Decker, J.M. , Hendrickson, W.A. , Huang, C.C. , Kwong, P.D. , Majeed, S. , Martin, L. , Robinson, J. , Roumestand, C. , Shaw, G.M. , Sodroski, J. , Stricher, F. , Vita, C. , Wyatt, R.