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1YTU

Structural basis for 5'-end-specific recognition of the guide rna strand by the a. fulgidus piwi protein

PDB DOI: 10.2210/pdb1ytu/pdb

Classification: RNA binding Protein/RNA
Organism(s): Mimivirus Reunion , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2005-02-11
Deposition Author(s): Ma, J.B. , Meister, G. , Patel, D.J. , Pei, Y. , Tuschl, T. , Yuan, Y.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

1ytu
Literature

Structural basis for 5'-end-specific recognition of the guide rna strand by the a. fulgidus piwi protein

Ma, J.B. , Meister, G. , Patel, D.J. , Pei, Y. , Tuschl, T. , Yuan, Y.R.

Primary Citation of Related Structures: 1YTU


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-R(P*AP*GP*AP*CP*AP*G)-3' c 6 NA AGACAG
5'-R(P*AP*GP*AP*CP*AP*G)-3' e 6 NA AGACAG
5'-R(P*UP*GP*UP*C)-3' d 4 NA UGUC
5'-R(P*UP*GP*UP*C)-3' f 4 NA UGUC

Proteins
Molecule Chains Sequence Length Organism Sequence
hypothetical protein AF1318 A 427 Mimivirus Reunion , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MMEYKIVENGLTYRIGNGASVPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSSLINQLKSQISSKIDEVWHIHNINISEFIYDSPHFDSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVDPEKGSDIIIGTGATRIDNVNLFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGGYPINPEGNRSLQTNPWFL
hypothetical protein AF1318 B 427 Mimivirus Reunion , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MMEYKIVENGLTYRIGNGASVPISNTGELIKGLRNYGPYEVPSLKYNQIALIHNNQFSSLINQLKSQISSKIDEVWHIHNINISEFIYDSPHFDSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVDPEKGSDIIIGTGATRIDNVNLFCFAMVFKKDGTMLWNEISPIVTSSEYLTYLKSTIKKVVYGFKKSNPDWDVEKLTLHVSGKRPKMKDGETKILKETVEELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLSSKRYLLTLLQPYLKRNGLEMVTPIKPLSVEIVSDNWTSEEYYHNVHEILDEIYYLSKMNWRGFRSRNLPVTVNYPKLVAGIIANVNRYGGYPINPEGNRSLQTNPWFL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2005-02-11
Deposition Author(s): Ma, J.B. , Meister, G. , Patel, D.J. , Pei, Y. , Tuschl, T. , Yuan, Y.R.