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1YFJ
T4dam in complex with adohcy and 15-mer oligonucleotide showing semi-specific and specific contact
PDB DOI: 10.2210/pdb1yfj/pdb
Classification: TRANSFERASE/DNA Organism(s): Enterobacteria Phage T4 , Synthetic Construct
Deposited: 2005-01-02 Deposition Author(s): Cheng, X. , Hattman, S. , Horton, J.R. , Jeltsch, A. , Liebert, K.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.69 Å
T4dam in complex with adohcy and 15-mer oligonucleotide showing semi-specific and specific contact
Cheng, X. , Hattman, S. , Horton, J.R. , Jeltsch, A. , Liebert, K.
Primary Citation of Related Structures: 1YFJ
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 1 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 2 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 3 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 4 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 5 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 6 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 7 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 8 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 9 | 15 | NA | TCACAGGATCCTGTG |
| 5'-D(*TP*CP*AP*CP*AP*GP*GP*AP*TP*CP*CP*TP*GP*TP*G)-3' | 0 | 15 | NA | TCACAGGATCCTGTG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA adenine methylase | A | 259 | Enterobacteria Phage T4 , Synthetic Construct | MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN |
| DNA adenine methylase | B | 259 | Enterobacteria Phage T4 , Synthetic Construct | MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN |
| DNA adenine methylase | C | 259 | Enterobacteria Phage T4 , Synthetic Construct | MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN |
| DNA adenine methylase | D | 259 | Enterobacteria Phage T4 , Synthetic Construct | MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN |
| DNA adenine methylase | E | 259 | Enterobacteria Phage T4 , Synthetic Construct | MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN |
| DNA adenine methylase | F | 259 | Enterobacteria Phage T4 , Synthetic Construct | MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGPVLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRDPLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDVKILDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLEHHGKENTLLKEWSKKYNVKHLNKKYVFNIYHSKEKNGTDEVYIFN |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2005-01-02 Deposition Author(s): Cheng, X. , Hattman, S. , Horton, J.R. , Jeltsch, A. , Liebert, K.