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FASTA Sequence PDB Format mmCIF Format
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1XPR

Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (fb)

PDB DOI: 10.2210/pdb1xpr/pdb

Classification: TRANSCRIPTION/RNA
Organism(s): Escherichia Coli , Synthetic Construct

Deposited: 2004-10-09
Deposition Author(s): Berger, J.M. , Brogan, A.P. , Kohn, H. , Park, B.S. , Skordalakes, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.15 Å

1xpr
Literature

Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (fb)

Berger, J.M. , Brogan, A.P. , Kohn, H. , Park, B.S. , Skordalakes, E.

Primary Citation of Related Structures: 1XPR


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3' g 8 NA CUCUCUCU
5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3' m 8 NA CUCUCUCU
5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3' h 8 NA CUCUCUCU
5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3' j 8 NA CUCUCUCU
5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3' k 8 NA CUCUCUCU
5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3' l 8 NA CUCUCUCU

Proteins
Molecule Chains Sequence Length Organism Sequence
Rho transcription termination factor A 419 Escherichia Coli , Synthetic Construct MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
Rho transcription termination factor B 419 Escherichia Coli , Synthetic Construct MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
Rho transcription termination factor C 419 Escherichia Coli , Synthetic Construct MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
Rho transcription termination factor D 419 Escherichia Coli , Synthetic Construct MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
Rho transcription termination factor E 419 Escherichia Coli , Synthetic Construct MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
Rho transcription termination factor F 419 Escherichia Coli , Synthetic Construct MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2004-10-09
Deposition Author(s): Berger, J.M. , Brogan, A.P. , Kohn, H. , Park, B.S. , Skordalakes, E.