1RY1
Structure of the signal recognition particle interacting with the elongation-arrested ribosome
PDB DOI: 10.2210/pdb1ry1/pdb
Classification: TRANSLATION Organism(s): Canis Lupus Familiaris , Synthetic Construct
Deposited: 2003-12-19 Deposition Author(s): Becker, T. , Beckmann, R. , Frank, J. , Grassucci, R.A. , Halic, M. , Pool, M.R. , Spahn, C.M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 12.0 Å
Structure of the signal recognition particle interacting with the elongation-arrested ribosome
Becker, T. , Beckmann, R. , Frank, J. , Grassucci, R.A. , Halic, M. , Pool, M.R. , Spahn, C.M.
Primary Citation of Related Structures: 1RY1
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| SRP Alu domain | e | 50 | NA | GGGCCGGGCGCGGUGGCGCGCGCCUGUAGUCCCAGCUACUCGGGAGGCUC |
| SRP S domain | a | 128 | NA | GACACUAAGUUCGGCAUCAAUAUGGUGACCUCCCGGGAGCGGGGGACCACCAGGUUGCCUAAGGAGGGGUGAACCGGCCCAGGUCGGAAACGGAGCAGGUCAAAACUCCCGUGCUGAUCAGUAGUGUC |
| SRP RNA | m | 27 | NA | AGGCUGGAGGAUCGCUUGAGUCCAGGA |
| SRP RNA | n | 31 | NA | CCUGUGCAACAUAGCGAGACCCCGUCUCUUU |
| SRP RNA | o | 24 | NA | GUUCUGGGCUGUAGUGCGCUAUGC |
| SRP RNA | p | 20 | NA | CAAUAGCCACUGCACUCCAG |
| SRP RNA | q | 12 | NA | CGAUCGGGUGUC |
| SRP RNA | r | 12 | NA | AUCGCGCCUGUG |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| SRP14 | D | 106 | Canis Lupus Familiaris , Synthetic Construct | VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTK |
| SRP19 | B | 108 | Canis Lupus Familiaris , Synthetic Construct | MRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ |
| SRP54NG | U | 296 | Canis Lupus Familiaris , Synthetic Construct | MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGD |
| SRP54M | W | 109 | Canis Lupus Familiaris , Synthetic Construct | QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM |
| signal sequence peptide | S | 18 | Canis Lupus Familiaris , Synthetic Construct | LGFPINFLTLYVTVQHKK |
| SRP9 | C | 85 | Canis Lupus Familiaris , Synthetic Construct | PQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVAKEARNVTMETE |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2003-12-19 Deposition Author(s): Becker, T. , Beckmann, R. , Frank, J. , Grassucci, R.A. , Halic, M. , Pool, M.R. , Spahn, C.M.